Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC26.05■■□□□ 1.76
USP42Q9H9J4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC26.05■■□□□ 1.76
USP42Q9H9J4 AC005829.2-201ENST00000571422 1056 ntBASIC26.05■■□□□ 1.76
USP42Q9H9J4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP42Q9H9J4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC26.05■■□□□ 1.76
USP42Q9H9J4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
USP42Q9H9J4 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
USP42Q9H9J4 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC26.05■■□□□ 1.76
USP42Q9H9J4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP42Q9H9J4 AC012306.2-201ENST00000609350 630 ntBASIC26.05■■□□□ 1.76
USP42Q9H9J4 AC110285.5-201ENST00000611501 352 ntBASIC26.05■■□□□ 1.76
USP42Q9H9J4 AC133561.5-201ENST00000635547 218 ntBASIC26.05■■□□□ 1.76
USP42Q9H9J4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP42Q9H9J4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP42Q9H9J4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC26.05■■□□□ 1.76
USP42Q9H9J4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP42Q9H9J4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP42Q9H9J4 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP42Q9H9J4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USP42Q9H9J4 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC26.04■■□□□ 1.76
USP42Q9H9J4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP42Q9H9J4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP42Q9H9J4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP42Q9H9J4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC26.03■■□□□ 1.76
USP42Q9H9J4 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USP42Q9H9J4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP42Q9H9J4 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
USP42Q9H9J4 KRASP1-201ENST00000407852 552 ntBASIC26.03■■□□□ 1.76
USP42Q9H9J4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC26.03■■□□□ 1.76
USP42Q9H9J4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USP42Q9H9J4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USP42Q9H9J4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
USP42Q9H9J4 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC26.03■■□□□ 1.76
USP42Q9H9J4 AC097493.4-201ENST00000641197 219 ntBASIC26.03■■□□□ 1.76
USP42Q9H9J4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC26.03■■□□□ 1.76
USP42Q9H9J4 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP42Q9H9J4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC26.03■■□□□ 1.76
USP42Q9H9J4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USP42Q9H9J4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC26.03■■□□□ 1.76
USP42Q9H9J4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP42Q9H9J4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP42Q9H9J4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC26.02■■□□□ 1.76
USP42Q9H9J4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USP42Q9H9J4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USP42Q9H9J4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC26.02■■□□□ 1.76
USP42Q9H9J4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC26.02■■□□□ 1.76
USP42Q9H9J4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC26.02■■□□□ 1.76
USP42Q9H9J4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC26.02■■□□□ 1.76
USP42Q9H9J4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC26.02■■□□□ 1.76
USP42Q9H9J4 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP42Q9H9J4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
USP42Q9H9J4 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USP42Q9H9J4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
USP42Q9H9J4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP42Q9H9J4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC26.01■■□□□ 1.75
USP42Q9H9J4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USP42Q9H9J4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USP42Q9H9J4 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
USP42Q9H9J4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.01■■□□□ 1.75
USP42Q9H9J4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC26.01■■□□□ 1.75
USP42Q9H9J4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
USP42Q9H9J4 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC26.01■■□□□ 1.75
USP42Q9H9J4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.01■■□□□ 1.75
USP42Q9H9J4 AL355075.4-201ENST00000554988 638 ntBASIC26.01■■□□□ 1.75
USP42Q9H9J4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
USP42Q9H9J4 AC006557.6-201ENST00000623071 864 ntBASIC26.01■■□□□ 1.75
USP42Q9H9J4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
USP42Q9H9J4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USP42Q9H9J4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC26■■□□□ 1.75
USP42Q9H9J4 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC26■■□□□ 1.75
USP42Q9H9J4 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC26■■□□□ 1.75
USP42Q9H9J4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC26■■□□□ 1.75
USP42Q9H9J4 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USP42Q9H9J4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USP42Q9H9J4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
USP42Q9H9J4 RCN1P1-201ENST00000400413 996 ntBASIC26■■□□□ 1.75
USP42Q9H9J4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC26■■□□□ 1.75
USP42Q9H9J4 RARRES2P10-201ENST00000564312 460 ntBASIC26■■□□□ 1.75
USP42Q9H9J4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC26■■□□□ 1.75
USP42Q9H9J4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC26■■□□□ 1.75
USP42Q9H9J4 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USP42Q9H9J4 MFF-203ENST00000349901 1716 ntTSL 2 BASIC26■■□□□ 1.75
USP42Q9H9J4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC26■■□□□ 1.75
USP42Q9H9J4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
USP42Q9H9J4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
USP42Q9H9J4 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
USP42Q9H9J4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
USP42Q9H9J4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
USP42Q9H9J4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
USP42Q9H9J4 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC25.99■■□□□ 1.75
USP42Q9H9J4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC25.99■■□□□ 1.75
USP42Q9H9J4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms