Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE4Q96A23 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CPNE4Q96A23 KRT17P1-201ENST00000399211 1546 ntBASIC18.28■□□□□ 0.52
CPNE4Q96A23 AC006128.1-201ENST00000624704 1661 ntBASIC18.28■□□□□ 0.52
CPNE4Q96A23 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE4Q96A23 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE4Q96A23 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CPNE4Q96A23 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.27■□□□□ 0.52
CPNE4Q96A23 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE4Q96A23 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE4Q96A23 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE4Q96A23 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE4Q96A23 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE4Q96A23 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.27■□□□□ 0.52
CPNE4Q96A23 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE4Q96A23 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CPNE4Q96A23 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE4Q96A23 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.27■□□□□ 0.52
CPNE4Q96A23 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE4Q96A23 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CPNE4Q96A23 MIR2861-201ENST00000636310 90 ntBASIC18.27■□□□□ 0.52
CPNE4Q96A23 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CPNE4Q96A23 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.27■□□□□ 0.51
CPNE4Q96A23 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CPNE4Q96A23 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.26■□□□□ 0.51
CPNE4Q96A23 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE4Q96A23 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE4Q96A23 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE4Q96A23 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CPNE4Q96A23 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CPNE4Q96A23 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CPNE4Q96A23 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.25■□□□□ 0.51
CPNE4Q96A23 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE4Q96A23 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CPNE4Q96A23 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE4Q96A23 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CPNE4Q96A23 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE4Q96A23 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.25■□□□□ 0.51
CPNE4Q96A23 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.25■□□□□ 0.51
CPNE4Q96A23 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE4Q96A23 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE4Q96A23 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE4Q96A23 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CPNE4Q96A23 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 DUSP5P2-201ENST00000426873 1033 ntBASIC18.24■□□□□ 0.51
CPNE4Q96A23 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 AC097658.1-201ENST00000475555 843 ntBASIC18.24■□□□□ 0.51
CPNE4Q96A23 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.24■□□□□ 0.51
CPNE4Q96A23 AC091874.3-201ENST00000512672 1195 ntBASIC18.24■□□□□ 0.51
CPNE4Q96A23 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms