Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 Z98882.1-201ENST00000622160 2253 ntBASIC19.9■□□□□ 0.78
LMX1AQ8TE12 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
LMX1AQ8TE12 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1AQ8TE12 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.88■□□□□ 0.77
LMX1AQ8TE12 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 AL023875.1-201ENST00000640777 796 ntBASIC19.87■□□□□ 0.77
LMX1AQ8TE12 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1AQ8TE12 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 EP400NL-214ENST00000641289 2402 ntBASIC19.86■□□□□ 0.77
LMX1AQ8TE12 PKD1P6-201ENST00000343738 4769 ntBASIC19.86■□□□□ 0.77
LMX1AQ8TE12 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 Z99916.2-201ENST00000604037 246 ntBASIC19.86■□□□□ 0.77
LMX1AQ8TE12 MTDHP1-201ENST00000605323 784 ntBASIC19.86■□□□□ 0.77
LMX1AQ8TE12 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1AQ8TE12 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms