Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 AC008694.1-202ENST00000636953 945 ntBASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 AC027702.1-201ENST00000563810 1770 ntBASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 CYP2T1P-201ENST00000432607 1285 ntBASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM40Q6P9F5 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 GABARAPL3-202ENST00000624044 1851 ntBASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 AC016405.3-201ENST00000607710 860 ntBASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM40Q6P9F5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.52■□□□□ 0.71
TRIM40Q6P9F5 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.52■□□□□ 0.71
TRIM40Q6P9F5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 CDCA4P2-201ENST00000441182 718 ntBASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 AC026185.1-201ENST00000445748 174 ntBASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 RARRES2P4-201ENST00000514074 484 ntBASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 AC005181.1-201ENST00000604782 1256 ntBASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 FP700111.2-201ENST00000619190 1892 ntBASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM40Q6P9F5 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 AC007225.1-201ENST00000566331 1836 ntBASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 AP005212.1-201ENST00000581547 1997 ntBASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM40Q6P9F5 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms