Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 AL391422.3-201ENST00000603791 2761 ntBASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 AC092720.2-201ENST00000602388 1665 ntBASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 AC011767.1-201ENST00000617410 1153 ntBASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF549Q6P9A3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 CDV3P1-201ENST00000471403 739 ntBASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 DUX4L16-201ENST00000555130 1264 ntBASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 AL591742.1-201ENST00000604433 565 ntBASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 AC016405.3-201ENST00000607710 860 ntBASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 MIR5787-201ENST00000611784 55 ntBASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF549Q6P9A3 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.83
ZNF549Q6P9A3 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 CNN2P6-201ENST00000439038 900 ntBASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF549Q6P9A3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 KRT8P36-201ENST00000489121 1440 ntBASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 AC016769.1-201ENST00000409132 1010 ntBASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 AC007322.4-201ENST00000509611 723 ntBASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 AC013268.1-206ENST00000638368 961 ntBASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 AC112229.1-201ENST00000639295 961 ntBASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.19■□□□□ 0.82
ZNF549Q6P9A3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 FAM21FP-204ENST00000608637 956 ntBASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
ZNF549Q6P9A3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF549Q6P9A3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms