Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RNFT1Q5M7Z0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.39■□□□□ 0.54
RNFT1Q5M7Z0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
RNFT1Q5M7Z0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 AC120498.8-201ENST00000614275 531 ntBASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 AC027702.1-201ENST00000563810 1770 ntBASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNFT1Q5M7Z0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 Z99916.2-201ENST00000604037 246 ntBASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 MTDHP1-201ENST00000605323 784 ntBASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNFT1Q5M7Z0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 AL049796.1-201ENST00000565336 1766 ntBASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNFT1Q5M7Z0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms