Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
FOXA3P55318 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
FOXA3P55318 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 AC011484.1-201ENST00000377652 1995 ntBASIC15.26■□□□□ 0.03
FOXA3P55318 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.26■□□□□ 0.03
FOXA3P55318 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
FOXA3P55318 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA3P55318 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC15.26■□□□□ 0.03
FOXA3P55318 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC15.26■□□□□ 0.03
FOXA3P55318 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA3P55318 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
FOXA3P55318 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
FOXA3P55318 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA3P55318 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
FOXA3P55318 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
FOXA3P55318 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA3P55318 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
FOXA3P55318 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA3P55318 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
FOXA3P55318 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 AC125437.2-201ENST00000625180 2167 ntBASIC15.25■□□□□ 0.03
FOXA3P55318 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA3P55318 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
FOXA3P55318 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA3P55318 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
FOXA3P55318 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA3P55318 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA3P55318 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
FOXA3P55318 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
FOXA3P55318 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 AC092720.2-201ENST00000602388 1665 ntBASIC15.23■□□□□ 0.03
FOXA3P55318 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC15.23■□□□□ 0.03
FOXA3P55318 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA3P55318 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FOXA3P55318 AC010997.5-201ENST00000609182 354 ntBASIC15.23■□□□□ 0.03
FOXA3P55318 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms