Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.57■□□□□ 0.88
CHRNA4P43681 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
CHRNA4P43681 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.57■□□□□ 0.88
CHRNA4P43681 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHRNA4P43681 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CHRNA4P43681 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
CHRNA4P43681 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.56■□□□□ 0.88
CHRNA4P43681 KRT8P36-201ENST00000489121 1440 ntBASIC20.56■□□□□ 0.88
CHRNA4P43681 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.56■□□□□ 0.88
CHRNA4P43681 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.56■□□□□ 0.88
CHRNA4P43681 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.56■□□□□ 0.88
CHRNA4P43681 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.56■□□□□ 0.88
CHRNA4P43681 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHRNA4P43681 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.55■□□□□ 0.88
CHRNA4P43681 AL512408.1-201ENST00000569378 2000 ntBASIC20.55■□□□□ 0.88
CHRNA4P43681 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 AC093787.1-201ENST00000450396 207 ntBASIC20.55■□□□□ 0.88
CHRNA4P43681 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.55■□□□□ 0.88
CHRNA4P43681 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.55■□□□□ 0.88
CHRNA4P43681 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHRNA4P43681 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.55■□□□□ 0.88
CHRNA4P43681 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.55■□□□□ 0.88
CHRNA4P43681 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CHRNA4P43681 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.55■□□□□ 0.88
CHRNA4P43681 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.55■□□□□ 0.88
CHRNA4P43681 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHRNA4P43681 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 AL391422.3-201ENST00000603791 2761 ntBASIC20.54■□□□□ 0.88
CHRNA4P43681 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CHRNA4P43681 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.54■□□□□ 0.88
CHRNA4P43681 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.54■□□□□ 0.88
CHRNA4P43681 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CHRNA4P43681 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.54■□□□□ 0.88
CHRNA4P43681 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.54■□□□□ 0.88
CHRNA4P43681 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.54■□□□□ 0.88
CHRNA4P43681 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
CHRNA4P43681 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.54■□□□□ 0.88
CHRNA4P43681 CROCCP5-201ENST00000436658 830 ntBASIC20.54■□□□□ 0.88
CHRNA4P43681 AC026185.1-201ENST00000445748 174 ntBASIC20.54■□□□□ 0.88
CHRNA4P43681 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 AC069236.1-201ENST00000604339 616 ntBASIC20.54■□□□□ 0.88
CHRNA4P43681 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CHRNA4P43681 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 AC092720.2-201ENST00000602388 1665 ntBASIC20.54■□□□□ 0.88
CHRNA4P43681 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHRNA4P43681 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.54■□□□□ 0.88
CHRNA4P43681 AC087633.2-202ENST00000565166 1439 ntBASIC20.53■□□□□ 0.88
CHRNA4P43681 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.53■□□□□ 0.88
CHRNA4P43681 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.53■□□□□ 0.88
CHRNA4P43681 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHRNA4P43681 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHRNA4P43681 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHRNA4P43681 MIR663A-201ENST00000385250 93 ntBASIC20.53■□□□□ 0.88
CHRNA4P43681 AL355472.2-201ENST00000422958 438 ntBASIC20.53■□□□□ 0.88
CHRNA4P43681 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.53■□□□□ 0.88
CHRNA4P43681 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.53■□□□□ 0.88
CHRNA4P43681 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHRNA4P43681 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHRNA4P43681 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHRNA4P43681 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHRNA4P43681 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CHRNA4P43681 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.53■□□□□ 0.88
CHRNA4P43681 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHRNA4P43681 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms