Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HTTP42858 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC23.16■■□□□ 1.3
HTTP42858 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HTTP42858 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.16■■□□□ 1.3
HTTP42858 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HTTP42858 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
HTTP42858 C9orf163-202ENST00000624034 2573 ntBASIC23.16■■□□□ 1.3
HTTP42858 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC23.15■■□□□ 1.3
HTTP42858 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HTTP42858 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
HTTP42858 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
HTTP42858 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.15■■□□□ 1.3
HTTP42858 FITM1-202ENST00000559294 800 ntBASIC23.15■■□□□ 1.3
HTTP42858 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HTTP42858 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC23.15■■□□□ 1.3
HTTP42858 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
HTTP42858 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.15■■□□□ 1.3
HTTP42858 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HTTP42858 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.14■■□□□ 1.3
HTTP42858 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
HTTP42858 COPS8-203ENST00000409334 794 ntTSL 5 BASIC23.14■■□□□ 1.3
HTTP42858 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
HTTP42858 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HTTP42858 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
HTTP42858 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
HTTP42858 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC23.14■■□□□ 1.29
HTTP42858 AC091076.1-201ENST00000610741 619 ntBASIC23.14■■□□□ 1.29
HTTP42858 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
HTTP42858 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HTTP42858 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HTTP42858 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC23.13■■□□□ 1.29
HTTP42858 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC23.13■■□□□ 1.29
HTTP42858 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HTTP42858 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.13■■□□□ 1.29
HTTP42858 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HTTP42858 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.13■■□□□ 1.29
HTTP42858 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HTTP42858 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HTTP42858 AC026396.1-201ENST00000419388 421 ntBASIC23.13■■□□□ 1.29
HTTP42858 AL137013.1-201ENST00000432946 1228 ntBASIC23.13■■□□□ 1.29
HTTP42858 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC23.13■■□□□ 1.29
HTTP42858 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
HTTP42858 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
HTTP42858 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC23.13■■□□□ 1.29
HTTP42858 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
HTTP42858 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HTTP42858 AC073195.1-201ENST00000607241 877 ntBASIC23.12■■□□□ 1.29
HTTP42858 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC23.12■■□□□ 1.29
HTTP42858 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HTTP42858 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HTTP42858 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
HTTP42858 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
HTTP42858 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HTTP42858 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HTTP42858 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.11■■□□□ 1.29
HTTP42858 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.11■■□□□ 1.29
HTTP42858 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC23.11■■□□□ 1.29
HTTP42858 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC23.11■■□□□ 1.29
HTTP42858 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.11■■□□□ 1.29
HTTP42858 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 RER1-204ENST00000378518 522 ntTSL 3 BASIC23.11■■□□□ 1.29
HTTP42858 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC23.11■■□□□ 1.29
HTTP42858 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
HTTP42858 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HTTP42858 PRR31-201ENST00000371629 978 ntTSL 2 BASIC23.11■■□□□ 1.29
HTTP42858 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
HTTP42858 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
HTTP42858 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC23.1■■□□□ 1.29
HTTP42858 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC23.1■■□□□ 1.29
HTTP42858 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
HTTP42858 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
HTTP42858 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HTTP42858 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HTTP42858 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
HTTP42858 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
HTTP42858 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
HTTP42858 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC23.1■■□□□ 1.29
HTTP42858 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.1■■□□□ 1.29
HTTP42858 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HTTP42858 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
HTTP42858 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HTTP42858 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HTTP42858 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HTTP42858 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HTTP42858 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
HTTP42858 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.09■■□□□ 1.29
HTTP42858 AC022616.7-201ENST00000525383 220 ntBASIC23.09■■□□□ 1.29
HTTP42858 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.09■■□□□ 1.29
HTTP42858 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC23.09■■□□□ 1.29
HTTP42858 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HTTP42858 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC23.08■■□□□ 1.29
HTTP42858 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC23.08■■□□□ 1.29
HTTP42858 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms