Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDB3O75112 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LDB3O75112 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LDB3O75112 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
LDB3O75112 GUSBP6-202ENST00000438529 1198 ntBASIC19.18■□□□□ 0.66
LDB3O75112 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.18■□□□□ 0.66
LDB3O75112 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.18■□□□□ 0.66
LDB3O75112 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
LDB3O75112 CYP2T3P-201ENST00000601990 817 ntBASIC19.18■□□□□ 0.66
LDB3O75112 AL109923.1-201ENST00000618799 583 ntBASIC19.18■□□□□ 0.66
LDB3O75112 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.18■□□□□ 0.66
LDB3O75112 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.18■□□□□ 0.66
LDB3O75112 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.18■□□□□ 0.66
LDB3O75112 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDB3O75112 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDB3O75112 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LDB3O75112 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LDB3O75112 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.17■□□□□ 0.66
LDB3O75112 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
LDB3O75112 KRT17P1-201ENST00000399211 1546 ntBASIC19.17■□□□□ 0.66
LDB3O75112 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDB3O75112 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDB3O75112 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.17■□□□□ 0.66
LDB3O75112 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDB3O75112 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.17■□□□□ 0.66
LDB3O75112 SLC29A4P1-201ENST00000398760 971 ntBASIC19.17■□□□□ 0.66
LDB3O75112 TSPY6P-201ENST00000448518 926 ntBASIC19.17■□□□□ 0.66
LDB3O75112 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.17■□□□□ 0.66
LDB3O75112 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.17■□□□□ 0.66
LDB3O75112 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.17■□□□□ 0.66
LDB3O75112 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.17■□□□□ 0.66
LDB3O75112 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.17■□□□□ 0.66
LDB3O75112 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.17■□□□□ 0.66
LDB3O75112 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.17■□□□□ 0.66
LDB3O75112 AL157384.1-201ENST00000445995 2473 ntBASIC19.17■□□□□ 0.66
LDB3O75112 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LDB3O75112 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
LDB3O75112 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDB3O75112 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
LDB3O75112 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LDB3O75112 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.16■□□□□ 0.66
LDB3O75112 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LDB3O75112 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LDB3O75112 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LDB3O75112 KRT18P68-201ENST00000392293 1000 ntBASIC19.16■□□□□ 0.66
LDB3O75112 BX276092.2-201ENST00000417668 665 ntBASIC19.16■□□□□ 0.66
LDB3O75112 HLA-L-209ENST00000420110 1011 ntBASIC19.16■□□□□ 0.66
LDB3O75112 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.16■□□□□ 0.66
LDB3O75112 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LDB3O75112 AC104771.1-201ENST00000603335 964 ntBASIC19.16■□□□□ 0.66
LDB3O75112 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.16■□□□□ 0.66
LDB3O75112 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.16■□□□□ 0.66
LDB3O75112 AL356652.1-201ENST00000615962 565 ntBASIC19.16■□□□□ 0.66
LDB3O75112 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.16■□□□□ 0.66
LDB3O75112 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDB3O75112 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDB3O75112 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.16■□□□□ 0.66
LDB3O75112 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDB3O75112 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDB3O75112 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.16■□□□□ 0.66
LDB3O75112 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDB3O75112 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
LDB3O75112 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.15■□□□□ 0.66
LDB3O75112 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 PGM5P4-201ENST00000421970 445 ntBASIC19.15■□□□□ 0.66
LDB3O75112 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDB3O75112 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LDB3O75112 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.14■□□□□ 0.65
LDB3O75112 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LDB3O75112 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDB3O75112 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LDB3O75112 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.14■□□□□ 0.65
LDB3O75112 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
LDB3O75112 ID1-201ENST00000376105 1233 ntBASIC19.14■□□□□ 0.65
LDB3O75112 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LDB3O75112 MIPEPP3-201ENST00000412105 444 ntBASIC19.14■□□□□ 0.65
LDB3O75112 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.14■□□□□ 0.65
LDB3O75112 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
LDB3O75112 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
LDB3O75112 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDB3O75112 KRT8P36-201ENST00000489121 1440 ntBASIC19.14■□□□□ 0.65
LDB3O75112 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.14■□□□□ 0.65
LDB3O75112 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDB3O75112 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.13■□□□□ 0.65
LDB3O75112 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDB3O75112 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.13■□□□□ 0.65
LDB3O75112 AC073314.1-201ENST00000568729 2216 ntBASIC19.13■□□□□ 0.65
LDB3O75112 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDB3O75112 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.13■□□□□ 0.65
LDB3O75112 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.13■□□□□ 0.65
LDB3O75112 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms