Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM38O00635 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
TRIM38O00635 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM38O00635 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.44■□□□□ 0.86
TRIM38O00635 AC098590.1-201ENST00000468126 897 ntBASIC20.44■□□□□ 0.86
TRIM38O00635 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.44■□□□□ 0.86
TRIM38O00635 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
TRIM38O00635 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM38O00635 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM38O00635 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM38O00635 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
TRIM38O00635 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
TRIM38O00635 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.43■□□□□ 0.86
TRIM38O00635 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.43■□□□□ 0.86
TRIM38O00635 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.43■□□□□ 0.86
TRIM38O00635 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.43■□□□□ 0.86
TRIM38O00635 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
TRIM38O00635 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.43■□□□□ 0.86
TRIM38O00635 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM38O00635 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TRIM38O00635 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
TRIM38O00635 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM38O00635 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM38O00635 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.42■□□□□ 0.86
TRIM38O00635 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
TRIM38O00635 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM38O00635 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
TRIM38O00635 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.42■□□□□ 0.86
TRIM38O00635 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM38O00635 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM38O00635 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.42■□□□□ 0.86
TRIM38O00635 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.42■□□□□ 0.86
TRIM38O00635 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM38O00635 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.41■□□□□ 0.86
TRIM38O00635 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRIM38O00635 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.41■□□□□ 0.86
TRIM38O00635 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM38O00635 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.41■□□□□ 0.86
TRIM38O00635 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.41■□□□□ 0.86
TRIM38O00635 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM38O00635 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.41■□□□□ 0.86
TRIM38O00635 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.41■□□□□ 0.86
TRIM38O00635 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
TRIM38O00635 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.41■□□□□ 0.86
TRIM38O00635 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM38O00635 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
TRIM38O00635 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM38O00635 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM38O00635 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
TRIM38O00635 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM38O00635 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM38O00635 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM38O00635 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM38O00635 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM38O00635 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.4■□□□□ 0.86
TRIM38O00635 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM38O00635 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM38O00635 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM38O00635 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM38O00635 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM38O00635 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
TRIM38O00635 AC026471.6-201ENST00000622954 1905 ntBASIC20.4■□□□□ 0.86
TRIM38O00635 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM38O00635 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM38O00635 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.39■□□□□ 0.86
TRIM38O00635 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM38O00635 FEM1AP1-201ENST00000431297 1995 ntBASIC20.39■□□□□ 0.86
TRIM38O00635 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM38O00635 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM38O00635 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM38O00635 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM38O00635 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM38O00635 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms