Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 MIR6821-201ENST00000617625 74 ntBASIC18.97■□□□□ 0.63
HMGN4O00479 SMG8-203ENST00000578922 2178 ntBASIC18.97■□□□□ 0.63
HMGN4O00479 KRT8P36-201ENST00000489121 1440 ntBASIC18.97■□□□□ 0.63
HMGN4O00479 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGN4O00479 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGN4O00479 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGN4O00479 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HMGN4O00479 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGN4O00479 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
HMGN4O00479 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HMGN4O00479 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HMGN4O00479 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGN4O00479 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 CDV3P1-201ENST00000471403 739 ntBASIC18.96■□□□□ 0.63
HMGN4O00479 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HMGN4O00479 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGN4O00479 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HMGN4O00479 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGN4O00479 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGN4O00479 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.95■□□□□ 0.62
HMGN4O00479 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.95■□□□□ 0.62
HMGN4O00479 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.95■□□□□ 0.62
HMGN4O00479 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.95■□□□□ 0.62
HMGN4O00479 AC087623.3-201ENST00000607047 1098 ntBASIC18.95■□□□□ 0.62
HMGN4O00479 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.95■□□□□ 0.62
HMGN4O00479 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
HMGN4O00479 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGN4O00479 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
HMGN4O00479 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.94■□□□□ 0.62
HMGN4O00479 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.94■□□□□ 0.62
HMGN4O00479 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.94■□□□□ 0.62
HMGN4O00479 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.94■□□□□ 0.62
HMGN4O00479 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.94■□□□□ 0.62
HMGN4O00479 FAM21FP-204ENST00000608637 956 ntBASIC18.94■□□□□ 0.62
HMGN4O00479 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.94■□□□□ 0.62
HMGN4O00479 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.94■□□□□ 0.62
HMGN4O00479 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGN4O00479 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.94■□□□□ 0.62
HMGN4O00479 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGN4O00479 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HMGN4O00479 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGN4O00479 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGN4O00479 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGN4O00479 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGN4O00479 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGN4O00479 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGN4O00479 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGN4O00479 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HMGN4O00479 TERF1P5-201ENST00000477545 1207 ntBASIC18.93■□□□□ 0.62
HMGN4O00479 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGN4O00479 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGN4O00479 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGN4O00479 AC010536.3-201ENST00000620306 533 ntBASIC18.93■□□□□ 0.62
HMGN4O00479 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGN4O00479 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HMGN4O00479 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGN4O00479 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGN4O00479 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGN4O00479 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGN4O00479 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGN4O00479 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
HMGN4O00479 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGN4O00479 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGN4O00479 TCF3P1-201ENST00000423021 1937 ntBASIC18.92■□□□□ 0.62
HMGN4O00479 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HMGN4O00479 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGN4O00479 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGN4O00479 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGN4O00479 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGN4O00479 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.92■□□□□ 0.62
HMGN4O00479 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGN4O00479 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGN4O00479 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGN4O00479 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HMGN4O00479 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.92■□□□□ 0.62
HMGN4O00479 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms