Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
UPK1AO00322 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.31■□□□□ 0.68
UPK1AO00322 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.31■□□□□ 0.68
UPK1AO00322 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.31■□□□□ 0.68
UPK1AO00322 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.31■□□□□ 0.68
UPK1AO00322 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
UPK1AO00322 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.31■□□□□ 0.68
UPK1AO00322 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
UPK1AO00322 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.31■□□□□ 0.68
UPK1AO00322 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK1AO00322 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
UPK1AO00322 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.31■□□□□ 0.68
UPK1AO00322 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 AC087289.5-201ENST00000586076 3175 ntBASIC19.3■□□□□ 0.68
UPK1AO00322 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
UPK1AO00322 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
UPK1AO00322 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.3■□□□□ 0.68
UPK1AO00322 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
UPK1AO00322 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.3■□□□□ 0.68
UPK1AO00322 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.3■□□□□ 0.68
UPK1AO00322 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.3■□□□□ 0.68
UPK1AO00322 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.3■□□□□ 0.68
UPK1AO00322 AC243732.1-201ENST00000612648 864 ntBASIC19.3■□□□□ 0.68
UPK1AO00322 MYCNOS-205ENST00000641950 531 ntBASIC19.3■□□□□ 0.68
UPK1AO00322 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.3■□□□□ 0.68
UPK1AO00322 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.3■□□□□ 0.68
UPK1AO00322 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.3■□□□□ 0.68
UPK1AO00322 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPK1AO00322 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPK1AO00322 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPK1AO00322 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPK1AO00322 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.29■□□□□ 0.68
UPK1AO00322 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPK1AO00322 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
UPK1AO00322 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.29■□□□□ 0.68
UPK1AO00322 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.29■□□□□ 0.68
UPK1AO00322 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPK1AO00322 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.29■□□□□ 0.68
UPK1AO00322 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.29■□□□□ 0.68
UPK1AO00322 MIR5787-201ENST00000611784 55 ntBASIC19.29■□□□□ 0.68
UPK1AO00322 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.29■□□□□ 0.68
UPK1AO00322 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.29■□□□□ 0.68
UPK1AO00322 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPK1AO00322 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
UPK1AO00322 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPK1AO00322 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
UPK1AO00322 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPK1AO00322 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.28■□□□□ 0.68
UPK1AO00322 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.28■□□□□ 0.68
UPK1AO00322 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.28■□□□□ 0.68
UPK1AO00322 AL162430.1-201ENST00000480705 870 ntBASIC19.28■□□□□ 0.68
UPK1AO00322 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
UPK1AO00322 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.28■□□□□ 0.68
UPK1AO00322 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
UPK1AO00322 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.28■□□□□ 0.68
UPK1AO00322 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
UPK1AO00322 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPK1AO00322 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.27■□□□□ 0.68
UPK1AO00322 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
UPK1AO00322 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
UPK1AO00322 AC091799.1-201ENST00000422823 811 ntBASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms