Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 AL031133.1-201ENST00000406807 723 ntBASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A6A6NMZ7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 AIRN-201ENST00000601203 4374 ntBASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 FAM8A6P-201ENST00000407496 1135 ntBASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 LIN28AP1-201ENST00000429574 405 ntBASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A6A6NMZ7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 AC010542.4-201ENST00000563151 1910 ntBASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL6A6A6NMZ7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
COL6A6A6NMZ7 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL6A6A6NMZ7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.46■□□□□ 0.54
COL6A6A6NMZ7 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.46■□□□□ 0.54
COL6A6A6NMZ7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 AC093323.1-202ENST00000635031 2045 ntBASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 HCG4P8-203ENST00000443049 980 ntBASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 AC092053.2-201ENST00000640557 1818 ntBASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL6A6A6NMZ7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 AC026471.6-201ENST00000622954 1905 ntBASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
COL6A6A6NMZ7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms