Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 AC055733.4-201ENST00000638462 1354 ntBASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 AC096631.2-201ENST00000436136 790 ntBASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP1AQ9HD42 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 AC087289.5-201ENST00000586076 3175 ntBASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 AC073314.1-201ENST00000568729 2216 ntBASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 BX005040.4-201ENST00000637145 1518 ntBASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CHMP1AQ9HD42 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CHMP1AQ9HD42 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms