Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MMP28Q9H239 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MMP28Q9H239 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MMP28Q9H239 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MMP28Q9H239 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MMP28Q9H239 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
MMP28Q9H239 AC133561.4-201ENST00000566112 224 ntBASIC17.94■□□□□ 0.46
MMP28Q9H239 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.94■□□□□ 0.46
MMP28Q9H239 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MMP28Q9H239 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.94■□□□□ 0.46
MMP28Q9H239 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MMP28Q9H239 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
MMP28Q9H239 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.94■□□□□ 0.46
MMP28Q9H239 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MMP28Q9H239 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
MMP28Q9H239 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MMP28Q9H239 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.93■□□□□ 0.46
MMP28Q9H239 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
MMP28Q9H239 PBX2P1-201ENST00000493219 1291 ntBASIC17.93■□□□□ 0.46
MMP28Q9H239 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MMP28Q9H239 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MMP28Q9H239 AC136469.2-201ENST00000623944 1028 ntBASIC17.93■□□□□ 0.46
MMP28Q9H239 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MMP28Q9H239 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
MMP28Q9H239 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
MMP28Q9H239 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.93■□□□□ 0.46
MMP28Q9H239 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MMP28Q9H239 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
MMP28Q9H239 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
MMP28Q9H239 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.93■□□□□ 0.46
MMP28Q9H239 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.92■□□□□ 0.46
MMP28Q9H239 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.92■□□□□ 0.46
MMP28Q9H239 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
MMP28Q9H239 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
MMP28Q9H239 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
MMP28Q9H239 UNC93B3-201ENST00000308076 687 ntBASIC17.92■□□□□ 0.46
MMP28Q9H239 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
MMP28Q9H239 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
MMP28Q9H239 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
MMP28Q9H239 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MMP28Q9H239 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC17.91■□□□□ 0.46
MMP28Q9H239 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
MMP28Q9H239 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
MMP28Q9H239 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.91■□□□□ 0.46
MMP28Q9H239 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 AC007225.1-201ENST00000566331 1836 ntBASIC17.91■□□□□ 0.46
MMP28Q9H239 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.91■□□□□ 0.46
MMP28Q9H239 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 AL158211.5-201ENST00000623583 2518 ntBASIC17.91■□□□□ 0.46
MMP28Q9H239 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
MMP28Q9H239 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.91■□□□□ 0.46
MMP28Q9H239 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.91■□□□□ 0.46
MMP28Q9H239 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.91■□□□□ 0.46
MMP28Q9H239 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MMP28Q9H239 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.9■□□□□ 0.46
MMP28Q9H239 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
MMP28Q9H239 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.9■□□□□ 0.46
MMP28Q9H239 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
MMP28Q9H239 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
MMP28Q9H239 OR2I1P-207ENST00000453522 948 ntBASIC17.9■□□□□ 0.46
MMP28Q9H239 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.9■□□□□ 0.46
MMP28Q9H239 AC106739.1-201ENST00000617035 715 ntBASIC17.9■□□□□ 0.46
MMP28Q9H239 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.9■□□□□ 0.46
MMP28Q9H239 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.9■□□□□ 0.46
MMP28Q9H239 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.9■□□□□ 0.46
MMP28Q9H239 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms