Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 AC100791.3-201ENST00000617619 330 ntBASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP3Q96DZ5 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 MCRIP2P1-201ENST00000394346 511 ntBASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 AC083880.1-201ENST00000608266 535 ntBASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP3Q96DZ5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 CYP2T3P-201ENST00000601990 817 ntBASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 MYC-209ENST00000641252 345 ntBASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 KRT17P1-201ENST00000399211 1546 ntBASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 AL158211.5-201ENST00000623583 2518 ntBASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.6■□□□□ 0.73
CLIP3Q96DZ5 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 AC116050.2-201ENST00000612102 1779 ntBASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
CLIP3Q96DZ5 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms