Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 AL390719.1-204ENST00000412397 1219 ntBASIC20.54■□□□□ 0.88
HMGB4Q8WW32 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 AC005829.2-201ENST00000571422 1056 ntBASIC20.54■□□□□ 0.88
HMGB4Q8WW32 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGB4Q8WW32 AC124016.1-201ENST00000609552 612 ntBASIC20.54■□□□□ 0.88
HMGB4Q8WW32 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 AC012618.2-201ENST00000428058 849 ntBASIC20.53■□□□□ 0.88
HMGB4Q8WW32 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB4Q8WW32 GUSBP5-202ENST00000510805 1989 ntBASIC20.52■□□□□ 0.88
HMGB4Q8WW32 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.52■□□□□ 0.88
HMGB4Q8WW32 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 RPS2P55-201ENST00000397318 883 ntBASIC20.52■□□□□ 0.88
HMGB4Q8WW32 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 TSPY7P-201ENST00000431358 1114 ntBASIC20.52■□□□□ 0.88
HMGB4Q8WW32 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 AC107956.1-201ENST00000494359 873 ntBASIC20.52■□□□□ 0.88
HMGB4Q8WW32 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 REXO1L12P-201ENST00000622156 912 ntBASIC20.52■□□□□ 0.88
HMGB4Q8WW32 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.52■□□□□ 0.88
HMGB4Q8WW32 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB4Q8WW32 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
HMGB4Q8WW32 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.52■□□□□ 0.87
HMGB4Q8WW32 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
HMGB4Q8WW32 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 KRASP1-201ENST00000407852 552 ntBASIC20.51■□□□□ 0.87
HMGB4Q8WW32 AC211429.1-201ENST00000415277 523 ntBASIC20.51■□□□□ 0.87
HMGB4Q8WW32 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 AC233702.5-201ENST00000584107 538 ntBASIC20.51■□□□□ 0.87
HMGB4Q8WW32 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.51■□□□□ 0.87
HMGB4Q8WW32 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB4Q8WW32 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 AC133681.1-201ENST00000465482 601 ntBASIC20.5■□□□□ 0.87
HMGB4Q8WW32 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 AC233723.2-201ENST00000623798 2106 ntBASIC20.5■□□□□ 0.87
HMGB4Q8WW32 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB4Q8WW32 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms