Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 KRT18P61-201ENST00000585825 1298 ntBASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 AL121603.2-201ENST00000557373 2117 ntBASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 AC092667.1-201ENST00000434301 2586 ntBASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM3Q53GG5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PDLIM3Q53GG5 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PDLIM3Q53GG5 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.29
PDLIM3Q53GG5 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 KRT18P29-201ENST00000397031 1267 ntBASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 AP005212.1-201ENST00000581547 1997 ntBASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 AL121832.2-201ENST00000610979 668 ntBASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 ITM2C-210ENST00000620962 501 ntBASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 AP006294.2-201ENST00000641667 209 ntBASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM3Q53GG5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM3Q53GG5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM3Q53GG5 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 544.1 ms