Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIM2P55344 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.39■□□□□ 0.69
LIM2P55344 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIM2P55344 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIM2P55344 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIM2P55344 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.39■□□□□ 0.69
LIM2P55344 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIM2P55344 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIM2P55344 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.39■□□□□ 0.69
LIM2P55344 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.39■□□□□ 0.69
LIM2P55344 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LIM2P55344 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIM2P55344 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIM2P55344 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIM2P55344 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIM2P55344 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIM2P55344 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.38■□□□□ 0.69
LIM2P55344 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIM2P55344 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.38■□□□□ 0.69
LIM2P55344 AC090192.1-201ENST00000517740 490 ntBASIC19.38■□□□□ 0.69
LIM2P55344 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.38■□□□□ 0.69
LIM2P55344 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIM2P55344 AC133552.2-202ENST00000575694 574 ntBASIC19.38■□□□□ 0.69
LIM2P55344 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LIM2P55344 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.38■□□□□ 0.69
LIM2P55344 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.38■□□□□ 0.69
LIM2P55344 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIM2P55344 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
LIM2P55344 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.37■□□□□ 0.69
LIM2P55344 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIM2P55344 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.37■□□□□ 0.69
LIM2P55344 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LIM2P55344 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIM2P55344 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.37■□□□□ 0.69
LIM2P55344 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.37■□□□□ 0.69
LIM2P55344 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIM2P55344 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIM2P55344 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIM2P55344 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIM2P55344 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIM2P55344 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LIM2P55344 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.36■□□□□ 0.69
LIM2P55344 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.36■□□□□ 0.69
LIM2P55344 AC092667.1-201ENST00000434301 2586 ntBASIC19.36■□□□□ 0.69
LIM2P55344 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 AC093787.1-201ENST00000450396 207 ntBASIC19.36■□□□□ 0.69
LIM2P55344 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.36■□□□□ 0.69
LIM2P55344 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.36■□□□□ 0.69
LIM2P55344 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
LIM2P55344 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
LIM2P55344 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
LIM2P55344 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIM2P55344 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LIM2P55344 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
LIM2P55344 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 CYP21A1P-202ENST00000354927 1481 ntBASIC19.35■□□□□ 0.69
LIM2P55344 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 FP700111.2-201ENST00000619190 1892 ntBASIC19.35■□□□□ 0.69
LIM2P55344 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.35■□□□□ 0.69
LIM2P55344 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 AC007225.1-201ENST00000566331 1836 ntBASIC19.35■□□□□ 0.69
LIM2P55344 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
LIM2P55344 AL512625.2-201ENST00000417533 625 ntBASIC19.35■□□□□ 0.69
LIM2P55344 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.35■□□□□ 0.69
LIM2P55344 AC100791.3-201ENST00000617619 330 ntBASIC19.35■□□□□ 0.69
LIM2P55344 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.35■□□□□ 0.69
LIM2P55344 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.35■□□□□ 0.69
LIM2P55344 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.35■□□□□ 0.69
LIM2P55344 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIM2P55344 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LIM2P55344 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.34■□□□□ 0.69
LIM2P55344 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
LIM2P55344 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.34■□□□□ 0.69
LIM2P55344 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 AF201337.1-201ENST00000520239 748 ntBASIC19.34■□□□□ 0.69
LIM2P55344 AC105036.2-201ENST00000569468 176 ntBASIC19.34■□□□□ 0.69
LIM2P55344 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
LIM2P55344 MIR2861-201ENST00000636310 90 ntBASIC19.34■□□□□ 0.69
LIM2P55344 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms