Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
MSH6P52701 CYP2D8P-201ENST00000433633 1490 ntBASIC28.53■■■□□ 2.16
MSH6P52701 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 AC104076.2-201ENST00000448912 469 ntBASIC28.53■■■□□ 2.16
MSH6P52701 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 AC010947.1-201ENST00000623454 693 ntBASIC28.53■■■□□ 2.16
MSH6P52701 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 GCA-201ENST00000233612 1694 ntTSL 2 BASIC28.53■■■□□ 2.16
MSH6P52701 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC28.53■■■□□ 2.16
MSH6P52701 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
MSH6P52701 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
MSH6P52701 STX5-203ENST00000394690 1568 ntTSL 5 BASIC28.52■■■□□ 2.16
MSH6P52701 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC28.52■■■□□ 2.16
MSH6P52701 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC28.52■■■□□ 2.16
MSH6P52701 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
MSH6P52701 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC28.52■■■□□ 2.16
MSH6P52701 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC28.52■■■□□ 2.16
MSH6P52701 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
MSH6P52701 AC068473.5-201ENST00000616428 2072 ntBASIC28.52■■■□□ 2.16
MSH6P52701 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
MSH6P52701 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC28.51■■■□□ 2.16
MSH6P52701 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC28.51■■■□□ 2.16
MSH6P52701 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC28.51■■■□□ 2.16
MSH6P52701 AL390955.1-201ENST00000428694 934 ntBASIC28.51■■■□□ 2.16
MSH6P52701 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC28.51■■■□□ 2.16
MSH6P52701 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC28.51■■■□□ 2.16
MSH6P52701 NBPF21P-201ENST00000425093 1451 ntBASIC28.51■■■□□ 2.15
MSH6P52701 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
MSH6P52701 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.15
MSH6P52701 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
MSH6P52701 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
MSH6P52701 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
MSH6P52701 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC28.5■■■□□ 2.15
MSH6P52701 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC28.5■■■□□ 2.15
MSH6P52701 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC28.5■■■□□ 2.15
MSH6P52701 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC28.5■■■□□ 2.15
MSH6P52701 WWOX-216ENST00000569818 525 ntBASIC28.5■■■□□ 2.15
MSH6P52701 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC28.5■■■□□ 2.15
MSH6P52701 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC28.5■■■□□ 2.15
MSH6P52701 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
MSH6P52701 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC28.5■■■□□ 2.15
MSH6P52701 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
MSH6P52701 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC28.5■■■□□ 2.15
MSH6P52701 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
MSH6P52701 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
MSH6P52701 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
MSH6P52701 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
MSH6P52701 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC28.5■■■□□ 2.15
MSH6P52701 TMA16-209ENST00000513272 803 ntTSL 2 BASIC28.5■■■□□ 2.15
MSH6P52701 FITM1-202ENST00000559294 800 ntBASIC28.5■■■□□ 2.15
MSH6P52701 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC28.5■■■□□ 2.15
MSH6P52701 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
MSH6P52701 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC28.5■■■□□ 2.15
MSH6P52701 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
MSH6P52701 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC28.5■■■□□ 2.15
MSH6P52701 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC28.5■■■□□ 2.15
MSH6P52701 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
MSH6P52701 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC28.49■■■□□ 2.15
MSH6P52701 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC28.49■■■□□ 2.15
MSH6P52701 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
MSH6P52701 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
MSH6P52701 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
MSH6P52701 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
MSH6P52701 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
MSH6P52701 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
MSH6P52701 HES2-206ENST00000489730 730 ntTSL 2 BASIC28.49■■■□□ 2.15
MSH6P52701 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC28.49■■■□□ 2.15
MSH6P52701 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC28.49■■■□□ 2.15
MSH6P52701 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC28.49■■■□□ 2.15
MSH6P52701 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
MSH6P52701 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
MSH6P52701 AC092053.2-201ENST00000640557 1818 ntBASIC28.48■■■□□ 2.15
MSH6P52701 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC28.48■■■□□ 2.15
MSH6P52701 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
MSH6P52701 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
MSH6P52701 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
MSH6P52701 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC28.48■■■□□ 2.15
MSH6P52701 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC28.48■■■□□ 2.15
MSH6P52701 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
MSH6P52701 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC28.47■■■□□ 2.15
MSH6P52701 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC28.47■■■□□ 2.15
MSH6P52701 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC28.47■■■□□ 2.15
MSH6P52701 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
MSH6P52701 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
MSH6P52701 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC28.47■■■□□ 2.15
MSH6P52701 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC28.47■■■□□ 2.15
MSH6P52701 LTBR-211ENST00000543190 785 ntTSL 3 BASIC28.47■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms