Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.97■□□□□ 0.79
SHMT2P34897 AC093787.1-201ENST00000450396 207 ntBASIC19.97■□□□□ 0.79
SHMT2P34897 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHMT2P34897 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHMT2P34897 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHMT2P34897 MKRN4P-201ENST00000444706 1521 ntBASIC19.97■□□□□ 0.79
SHMT2P34897 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SHMT2P34897 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.96■□□□□ 0.79
SHMT2P34897 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.96■□□□□ 0.79
SHMT2P34897 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.96■□□□□ 0.79
SHMT2P34897 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.96■□□□□ 0.79
SHMT2P34897 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SHMT2P34897 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.96■□□□□ 0.79
SHMT2P34897 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
SHMT2P34897 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.96■□□□□ 0.79
SHMT2P34897 AC100791.3-201ENST00000617619 330 ntBASIC19.96■□□□□ 0.79
SHMT2P34897 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHMT2P34897 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.96■□□□□ 0.79
SHMT2P34897 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
SHMT2P34897 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.95■□□□□ 0.78
SHMT2P34897 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SHMT2P34897 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SHMT2P34897 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SHMT2P34897 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 GUSBP6-202ENST00000438529 1198 ntBASIC19.95■□□□□ 0.78
SHMT2P34897 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.95■□□□□ 0.78
SHMT2P34897 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SHMT2P34897 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SHMT2P34897 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SHMT2P34897 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.95■□□□□ 0.78
SHMT2P34897 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHMT2P34897 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.95■□□□□ 0.78
SHMT2P34897 AC010980.2-201ENST00000587099 1412 ntBASIC19.94■□□□□ 0.78
SHMT2P34897 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 RNF165-205ENST00000588679 2904 ntBASIC19.94■□□□□ 0.78
SHMT2P34897 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
SHMT2P34897 AC011484.1-201ENST00000377652 1995 ntBASIC19.94■□□□□ 0.78
SHMT2P34897 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.94■□□□□ 0.78
SHMT2P34897 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.94■□□□□ 0.78
SHMT2P34897 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.94■□□□□ 0.78
SHMT2P34897 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.94■□□□□ 0.78
SHMT2P34897 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.94■□□□□ 0.78
SHMT2P34897 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.94■□□□□ 0.78
SHMT2P34897 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SHMT2P34897 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHMT2P34897 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHMT2P34897 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
SHMT2P34897 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHMT2P34897 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHMT2P34897 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.93■□□□□ 0.78
SHMT2P34897 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.93■□□□□ 0.78
SHMT2P34897 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
SHMT2P34897 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHMT2P34897 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.93■□□□□ 0.78
SHMT2P34897 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHMT2P34897 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHMT2P34897 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.92■□□□□ 0.78
SHMT2P34897 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SHMT2P34897 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SHMT2P34897 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 MCRIP2P1-201ENST00000394346 511 ntBASIC19.92■□□□□ 0.78
SHMT2P34897 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.92■□□□□ 0.78
SHMT2P34897 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.92■□□□□ 0.78
SHMT2P34897 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.92■□□□□ 0.78
SHMT2P34897 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
SHMT2P34897 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms