Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 SLC7A5P2-201ENST00000553010 536 ntBASIC15.52■□□□□ 0.08
HLA-DMBP28068 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 AC138907.5-202ENST00000569484 235 ntBASIC15.52■□□□□ 0.08
HLA-DMBP28068 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
HLA-DMBP28068 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DMBP28068 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DMBP28068 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DMBP28068 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DMBP28068 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DMBP28068 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
HLA-DMBP28068 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DMBP28068 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DMBP28068 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.07
HLA-DMBP28068 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC15.52■□□□□ 0.07
HLA-DMBP28068 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC15.52■□□□□ 0.07
HLA-DMBP28068 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 AC104187.1-201ENST00000607510 612 ntBASIC15.51■□□□□ 0.07
HLA-DMBP28068 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DMBP28068 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DMBP28068 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DMBP28068 AL162377.1-201ENST00000618844 1793 ntBASIC15.5■□□□□ 0.07
HLA-DMBP28068 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DMBP28068 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 KRT18P5-201ENST00000436075 1291 ntBASIC15.5■□□□□ 0.07
HLA-DMBP28068 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 KRT18P14-201ENST00000534205 1250 ntBASIC15.5■□□□□ 0.07
HLA-DMBP28068 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DMBP28068 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DMBP28068 AC099778.1-201ENST00000568593 1911 ntBASIC15.5■□□□□ 0.07
HLA-DMBP28068 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DMBP28068 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DMBP28068 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DMBP28068 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DMBP28068 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC15.5■□□□□ 0.07
HLA-DMBP28068 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DMBP28068 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DMBP28068 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.49■□□□□ 0.07
HLA-DMBP28068 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DMBP28068 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC15.49■□□□□ 0.07
HLA-DMBP28068 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DMBP28068 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DMBP28068 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DMBP28068 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DMBP28068 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DMBP28068 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms