Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VIMP08670 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
VIMP08670 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.46■□□□□ 0.87
VIMP08670 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.46■□□□□ 0.87
VIMP08670 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.46■□□□□ 0.87
VIMP08670 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 AC010997.5-201ENST00000609182 354 ntBASIC20.46■□□□□ 0.87
VIMP08670 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.46■□□□□ 0.87
VIMP08670 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.46■□□□□ 0.87
VIMP08670 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.46■□□□□ 0.87
VIMP08670 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VIMP08670 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.46■□□□□ 0.87
VIMP08670 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.45■□□□□ 0.87
VIMP08670 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
VIMP08670 AC092720.2-201ENST00000602388 1665 ntBASIC20.45■□□□□ 0.86
VIMP08670 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
VIMP08670 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.45■□□□□ 0.86
VIMP08670 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
VIMP08670 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VIMP08670 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.45■□□□□ 0.86
VIMP08670 KRT125P-201ENST00000546827 989 ntBASIC20.45■□□□□ 0.86
VIMP08670 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
VIMP08670 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
VIMP08670 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.45■□□□□ 0.86
VIMP08670 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VIMP08670 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.44■□□□□ 0.86
VIMP08670 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.44■□□□□ 0.86
VIMP08670 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
VIMP08670 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
VIMP08670 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
VIMP08670 AC010525.1-201ENST00000585559 441 ntBASIC20.44■□□□□ 0.86
VIMP08670 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
VIMP08670 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VIMP08670 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.44■□□□□ 0.86
VIMP08670 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
VIMP08670 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.43■□□□□ 0.86
VIMP08670 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.43■□□□□ 0.86
VIMP08670 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.43■□□□□ 0.86
VIMP08670 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VIMP08670 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.42■□□□□ 0.86
VIMP08670 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
VIMP08670 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.42■□□□□ 0.86
VIMP08670 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
VIMP08670 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.42■□□□□ 0.86
VIMP08670 MIR3181-201ENST00000578512 73 ntBASIC20.42■□□□□ 0.86
VIMP08670 AC099791.2-201ENST00000605725 427 ntBASIC20.42■□□□□ 0.86
VIMP08670 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
VIMP08670 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms