Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.01■□□□□ 0.63
HMGN4O00479 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.01■□□□□ 0.63
HMGN4O00479 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGN4O00479 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGN4O00479 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
HMGN4O00479 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HMGN4O00479 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGN4O00479 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 MYCNOS-205ENST00000641950 531 ntBASIC19.01■□□□□ 0.63
HMGN4O00479 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGN4O00479 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGN4O00479 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGN4O00479 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HMGN4O00479 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGN4O00479 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGN4O00479 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19■□□□□ 0.63
HMGN4O00479 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGN4O00479 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGN4O00479 SAPCD2P1-201ENST00000395413 1184 ntBASIC19■□□□□ 0.63
HMGN4O00479 AC097381.1-201ENST00000429019 1296 ntBASIC19■□□□□ 0.63
HMGN4O00479 NTF6G-201ENST00000591094 616 ntBASIC19■□□□□ 0.63
HMGN4O00479 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
HMGN4O00479 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGN4O00479 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19■□□□□ 0.63
HMGN4O00479 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HMGN4O00479 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
HMGN4O00479 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19■□□□□ 0.63
HMGN4O00479 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGN4O00479 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.99■□□□□ 0.63
HMGN4O00479 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGN4O00479 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HMGN4O00479 AC034268.1-201ENST00000441047 882 ntBASIC18.99■□□□□ 0.63
HMGN4O00479 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGN4O00479 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGN4O00479 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGN4O00479 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HMGN4O00479 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGN4O00479 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.99■□□□□ 0.63
HMGN4O00479 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGN4O00479 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HMGN4O00479 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGN4O00479 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
HMGN4O00479 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
HMGN4O00479 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.98■□□□□ 0.63
HMGN4O00479 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.98■□□□□ 0.63
HMGN4O00479 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
HMGN4O00479 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
HMGN4O00479 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
HMGN4O00479 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGN4O00479 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.98■□□□□ 0.63
HMGN4O00479 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.98■□□□□ 0.63
HMGN4O00479 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGN4O00479 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HMGN4O00479 AFG3L1P-217ENST00000557444 2447 ntBASIC18.98■□□□□ 0.63
HMGN4O00479 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGN4O00479 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGN4O00479 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGN4O00479 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGN4O00479 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGN4O00479 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGN4O00479 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGN4O00479 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGN4O00479 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGN4O00479 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGN4O00479 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGN4O00479 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.97■□□□□ 0.63
HMGN4O00479 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGN4O00479 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGN4O00479 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGN4O00479 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms