Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AL138781.1-201ENST00000566567 1274 ntBASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 SPI1-203ENST00000533030 661 ntTSL 2 BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC27.45■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 AC027702.1-201ENST00000563810 1770 ntBASIC27.45■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 AC098590.1-201ENST00000468126 897 ntBASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 AC083906.2-201ENST00000511578 360 ntBASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC27.44■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 KRT19P1-201ENST00000405746 1186 ntBASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC27.43■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 POU5F1P4-201ENST00000413175 1085 ntBASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms