Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 DUX4L23-201ENST00000615195 1269 ntBASIC28.68■■■□□ 2.18
RC3H2Q9HBD1 DUX4L24-201ENST00000617576 1269 ntBASIC28.68■■■□□ 2.18
RC3H2Q9HBD1 DUX4L22-201ENST00000618238 1269 ntBASIC28.68■■■□□ 2.18
RC3H2Q9HBD1 DUX4L20-201ENST00000619712 1269 ntBASIC28.68■■■□□ 2.18
RC3H2Q9HBD1 DUX4L21-201ENST00000622058 1269 ntBASIC28.68■■■□□ 2.18
RC3H2Q9HBD1 DUX4L10-201ENST00000622460 1267 ntBASIC28.68■■■□□ 2.18
RC3H2Q9HBD1 DUX4L25-201ENST00000624915 1269 ntBASIC28.68■■■□□ 2.18
RC3H2Q9HBD1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.68■■■□□ 2.18
RC3H2Q9HBD1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
RC3H2Q9HBD1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
RC3H2Q9HBD1 AC120057.4-201ENST00000624722 1615 ntBASIC28.66■■■□□ 2.18
RC3H2Q9HBD1 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
RC3H2Q9HBD1 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RC3H2Q9HBD1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
RC3H2Q9HBD1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RC3H2Q9HBD1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RC3H2Q9HBD1 ABHD17AP3-201ENST00000503096 1137 ntBASIC28.64■■■□□ 2.18
RC3H2Q9HBD1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.64■■■□□ 2.18
RC3H2Q9HBD1 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.64■■■□□ 2.17
RC3H2Q9HBD1 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
RC3H2Q9HBD1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H2Q9HBD1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H2Q9HBD1 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H2Q9HBD1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.61■■■□□ 2.17
RC3H2Q9HBD1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H2Q9HBD1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.6■■■□□ 2.17
RC3H2Q9HBD1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RC3H2Q9HBD1 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
RC3H2Q9HBD1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.59■■■□□ 2.17
RC3H2Q9HBD1 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
RC3H2Q9HBD1 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.58■■■□□ 2.17
RC3H2Q9HBD1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC28.58■■■□□ 2.17
RC3H2Q9HBD1 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
RC3H2Q9HBD1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
RC3H2Q9HBD1 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.57■■■□□ 2.16
RC3H2Q9HBD1 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
RC3H2Q9HBD1 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.56■■■□□ 2.16
RC3H2Q9HBD1 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.56■■■□□ 2.16
RC3H2Q9HBD1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
RC3H2Q9HBD1 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.55■■■□□ 2.16
RC3H2Q9HBD1 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.54■■■□□ 2.16
RC3H2Q9HBD1 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC28.54■■■□□ 2.16
RC3H2Q9HBD1 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
RC3H2Q9HBD1 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.53■■■□□ 2.16
RC3H2Q9HBD1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
RC3H2Q9HBD1 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
RC3H2Q9HBD1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28.51■■■□□ 2.15
RC3H2Q9HBD1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC28.49■■■□□ 2.15
RC3H2Q9HBD1 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
RC3H2Q9HBD1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
RC3H2Q9HBD1 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC28.47■■■□□ 2.15
RC3H2Q9HBD1 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC28.47■■■□□ 2.15
RC3H2Q9HBD1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC28.47■■■□□ 2.15
RC3H2Q9HBD1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
RC3H2Q9HBD1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
RC3H2Q9HBD1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.45■■■□□ 2.14
RC3H2Q9HBD1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC28.45■■■□□ 2.14
RC3H2Q9HBD1 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
RC3H2Q9HBD1 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
RC3H2Q9HBD1 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
RC3H2Q9HBD1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
RC3H2Q9HBD1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC28.42■■■□□ 2.14
RC3H2Q9HBD1 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.42■■■□□ 2.14
RC3H2Q9HBD1 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC28.42■■■□□ 2.14
RC3H2Q9HBD1 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
RC3H2Q9HBD1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
RC3H2Q9HBD1 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC28.41■■■□□ 2.14
RC3H2Q9HBD1 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC28.41■■■□□ 2.14
RC3H2Q9HBD1 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.41■■■□□ 2.14
RC3H2Q9HBD1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RC3H2Q9HBD1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RC3H2Q9HBD1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC28.39■■■□□ 2.14
RC3H2Q9HBD1 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
RC3H2Q9HBD1 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
RC3H2Q9HBD1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
RC3H2Q9HBD1 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC28.39■■■□□ 2.13
RC3H2Q9HBD1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H2Q9HBD1 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.37■■■□□ 2.13
RC3H2Q9HBD1 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC28.37■■■□□ 2.13
RC3H2Q9HBD1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC28.36■■■□□ 2.13
RC3H2Q9HBD1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H2Q9HBD1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC28.35■■■□□ 2.13
RC3H2Q9HBD1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H2Q9HBD1 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.35■■■□□ 2.13
RC3H2Q9HBD1 LINC00273-201ENST00000539813 1452 ntBASIC28.34■■■□□ 2.13
RC3H2Q9HBD1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RC3H2Q9HBD1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
RC3H2Q9HBD1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
RC3H2Q9HBD1 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.33■■■□□ 2.12
RC3H2Q9HBD1 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RC3H2Q9HBD1 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RC3H2Q9HBD1 RARRES2P2-201ENST00000394842 485 ntBASIC28.32■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms