Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav6d-5A0A075B6B9 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav6d-5A0A075B6B9 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav6d-5A0A075B6B9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav6d-5A0A075B6B9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav6d-5A0A075B6B9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav6d-5A0A075B6B9 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Trav6d-5A0A075B6B9 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC19.64■□□□□ 0.73
Trav6d-5A0A075B6B9 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trav6d-5A0A075B6B9 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trav6d-5A0A075B6B9 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Trav6d-5A0A075B6B9 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav6d-5A0A075B6B9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav6d-5A0A075B6B9 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trav6d-5A0A075B6B9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav6d-5A0A075B6B9 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
Trav6d-5A0A075B6B9 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav6d-5A0A075B6B9 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav6d-5A0A075B6B9 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav6d-5A0A075B6B9 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav6d-5A0A075B6B9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trav6d-5A0A075B6B9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC19.59■□□□□ 0.73
Trav6d-5A0A075B6B9 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Trav6d-5A0A075B6B9 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Trav6d-5A0A075B6B9 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trav6d-5A0A075B6B9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trav6d-5A0A075B6B9 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6d-5A0A075B6B9 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6d-5A0A075B6B9 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6d-5A0A075B6B9 Peli2-204ENSMUST00000226513 1320 ntBASIC19.56■□□□□ 0.72
Trav6d-5A0A075B6B9 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6d-5A0A075B6B9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav6d-5A0A075B6B9 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav6d-5A0A075B6B9 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.55■□□□□ 0.72
Trav6d-5A0A075B6B9 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav6d-5A0A075B6B9 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trav6d-5A0A075B6B9 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6d-5A0A075B6B9 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6d-5A0A075B6B9 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6d-5A0A075B6B9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6d-5A0A075B6B9 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav6d-5A0A075B6B9 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav6d-5A0A075B6B9 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav6d-5A0A075B6B9 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trav6d-5A0A075B6B9 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6d-5A0A075B6B9 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6d-5A0A075B6B9 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Trav6d-5A0A075B6B9 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6d-5A0A075B6B9 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6d-5A0A075B6B9 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6d-5A0A075B6B9 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6d-5A0A075B6B9 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6d-5A0A075B6B9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav6d-5A0A075B6B9 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav6d-5A0A075B6B9 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav6d-5A0A075B6B9 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav6d-5A0A075B6B9 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6d-5A0A075B6B9 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Trav6d-5A0A075B6B9 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6d-5A0A075B6B9 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6d-5A0A075B6B9 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.46■□□□□ 0.71
Trav6d-5A0A075B6B9 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6d-5A0A075B6B9 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Trav6d-5A0A075B6B9 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6d-5A0A075B6B9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav6d-5A0A075B6B9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trav6d-5A0A075B6B9 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trav6d-5A0A075B6B9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.44■□□□□ 0.7
Trav6d-5A0A075B6B9 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav6d-5A0A075B6B9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav6d-5A0A075B6B9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav6d-5A0A075B6B9 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav6d-5A0A075B6B9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav6d-5A0A075B6B9 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav6d-5A0A075B6B9 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.42■□□□□ 0.7
Trav6d-5A0A075B6B9 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav6d-5A0A075B6B9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6d-5A0A075B6B9 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6d-5A0A075B6B9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6d-5A0A075B6B9 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav6d-5A0A075B6B9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trav6d-5A0A075B6B9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.4■□□□□ 0.7
Trav6d-5A0A075B6B9 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav6d-5A0A075B6B9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav6d-5A0A075B6B9 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trav6d-5A0A075B6B9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav6d-5A0A075B6B9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Trav6d-5A0A075B6B9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-5A0A075B6B9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-5A0A075B6B9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-5A0A075B6B9 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Trav6d-5A0A075B6B9 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-5A0A075B6B9 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6d-5A0A075B6B9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6d-5A0A075B6B9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6d-5A0A075B6B9 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6d-5A0A075B6B9 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6d-5A0A075B6B9 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6d-5A0A075B6B9 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6d-5A0A075B6B9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms