Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28,33■■■□□ 2,13
Trav6d-5A0A075B6B9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27,36■■□□□ 1,97
Trav6d-5A0A075B6B9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27,27■■□□□ 1,96
Trav6d-5A0A075B6B9 Gm25239-201ENSMUST00000174915 86 ntBASIC27,18■■□□□ 1,94
Trav6d-5A0A075B6B9 Psd-208ENSMUST00000224556 2034 ntBASIC26,62■■□□□ 1,85
Trav6d-5A0A075B6B9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26,33■■□□□ 1,8
Trav6d-5A0A075B6B9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25,92■■□□□ 1,74
Trav6d-5A0A075B6B9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25,88■■□□□ 1,73
Trav6d-5A0A075B6B9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25,72■■□□□ 1,71
Trav6d-5A0A075B6B9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25,44■■□□□ 1,66
Trav6d-5A0A075B6B9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25,39■■□□□ 1,66
Trav6d-5A0A075B6B9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25,39■■□□□ 1,66
Trav6d-5A0A075B6B9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25,33■■□□□ 1,65
Trav6d-5A0A075B6B9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25,02■■□□□ 1,6
Trav6d-5A0A075B6B9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1,59
Trav6d-5A0A075B6B9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24,95■■□□□ 1,59
Trav6d-5A0A075B6B9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24,9■■□□□ 1,58
Trav6d-5A0A075B6B9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24,73■■□□□ 1,55
Trav6d-5A0A075B6B9 Gm15042-201ENSMUST00000120212 883 ntBASIC24,71■■□□□ 1,55
Trav6d-5A0A075B6B9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24,69■■□□□ 1,54
Trav6d-5A0A075B6B9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC24,67■■□□□ 1,54
Trav6d-5A0A075B6B9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24,65■■□□□ 1,54
Trav6d-5A0A075B6B9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24,63■■□□□ 1,53
Trav6d-5A0A075B6B9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24,47■■□□□ 1,51
Trav6d-5A0A075B6B9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24,42■■□□□ 1,5
Trav6d-5A0A075B6B9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24,36■■□□□ 1,49
Trav6d-5A0A075B6B9 Gm15045-201ENSMUST00000117359 883 ntBASIC24,32■■□□□ 1,48
Trav6d-5A0A075B6B9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24,25■■□□□ 1,47
Trav6d-5A0A075B6B9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24,19■■□□□ 1,46
Trav6d-5A0A075B6B9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24,17■■□□□ 1,46
Trav6d-5A0A075B6B9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24,12■■□□□ 1,45
Trav6d-5A0A075B6B9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24,05■■□□□ 1,44
Trav6d-5A0A075B6B9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24,04■■□□□ 1,44
Trav6d-5A0A075B6B9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24,04■■□□□ 1,44
Trav6d-5A0A075B6B9 Gm10524-201ENSMUST00000181931 1893 ntBASIC23,99■■□□□ 1,43
Trav6d-5A0A075B6B9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23,97■■□□□ 1,43
Trav6d-5A0A075B6B9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23,92■■□□□ 1,42
Trav6d-5A0A075B6B9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23,91■■□□□ 1,42
Trav6d-5A0A075B6B9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23,91■■□□□ 1,42
Trav6d-5A0A075B6B9 Gm42596-201ENSMUST00000196305 1958 ntBASIC23,89■■□□□ 1,42
Trav6d-5A0A075B6B9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23,85■■□□□ 1,41
Trav6d-5A0A075B6B9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23,77■■□□□ 1,4
Trav6d-5A0A075B6B9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23,75■■□□□ 1,39
Trav6d-5A0A075B6B9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23,75■■□□□ 1,39
Trav6d-5A0A075B6B9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23,74■■□□□ 1,39
Trav6d-5A0A075B6B9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23,7■■□□□ 1,38
Trav6d-5A0A075B6B9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23,64■■□□□ 1,37
Trav6d-5A0A075B6B9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23,63■■□□□ 1,37
Trav6d-5A0A075B6B9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23,6■■□□□ 1,37
Trav6d-5A0A075B6B9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23,56■■□□□ 1,36
Trav6d-5A0A075B6B9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23,55■■□□□ 1,36
Trav6d-5A0A075B6B9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23,48■■□□□ 1,35
Trav6d-5A0A075B6B9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23,41■■□□□ 1,34
Trav6d-5A0A075B6B9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23,37■■□□□ 1,33
Trav6d-5A0A075B6B9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23,31■■□□□ 1,32
Trav6d-5A0A075B6B9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23,3■■□□□ 1,32
Trav6d-5A0A075B6B9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23,24■■□□□ 1,31
Trav6d-5A0A075B6B9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23,17■■□□□ 1,3
Trav6d-5A0A075B6B9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23,16■■□□□ 1,3
Trav6d-5A0A075B6B9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23,16■■□□□ 1,3
Trav6d-5A0A075B6B9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23,14■■□□□ 1,3
Trav6d-5A0A075B6B9 Gm24109-201ENSMUST00000175489 103 ntBASIC23,14■■□□□ 1,29
Trav6d-5A0A075B6B9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23,14■■□□□ 1,29
Trav6d-5A0A075B6B9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23,11■■□□□ 1,29
Trav6d-5A0A075B6B9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23,11■■□□□ 1,29
Trav6d-5A0A075B6B9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC23,05■■□□□ 1,28
Trav6d-5A0A075B6B9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23,03■■□□□ 1,28
Trav6d-5A0A075B6B9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC22,93■■□□□ 1,26
Trav6d-5A0A075B6B9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22,91■■□□□ 1,26
Trav6d-5A0A075B6B9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22,91■■□□□ 1,26
Trav6d-5A0A075B6B9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22,87■■□□□ 1,25
Trav6d-5A0A075B6B9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22,86■■□□□ 1,25
Trav6d-5A0A075B6B9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22,86■■□□□ 1,25
Trav6d-5A0A075B6B9 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22,85■■□□□ 1,25
Trav6d-5A0A075B6B9 Gm23366-201ENSMUST00000175022 89 ntBASIC22,85■■□□□ 1,25
Trav6d-5A0A075B6B9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22,81■■□□□ 1,24
Trav6d-5A0A075B6B9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22,81■■□□□ 1,24
Trav6d-5A0A075B6B9 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22,78■■□□□ 1,24
Trav6d-5A0A075B6B9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22,77■■□□□ 1,24
Trav6d-5A0A075B6B9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC22,7■■□□□ 1,22
Trav6d-5A0A075B6B9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22,7■■□□□ 1,22
Trav6d-5A0A075B6B9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22,68■■□□□ 1,22
Trav6d-5A0A075B6B9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22,68■■□□□ 1,22
Trav6d-5A0A075B6B9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22,66■■□□□ 1,22
Trav6d-5A0A075B6B9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22,61■■□□□ 1,21
Trav6d-5A0A075B6B9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22,6■■□□□ 1,21
Trav6d-5A0A075B6B9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22,6■■□□□ 1,21
Trav6d-5A0A075B6B9 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22,59■■□□□ 1,21
Trav6d-5A0A075B6B9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22,56■■□□□ 1,2
Trav6d-5A0A075B6B9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22,54■■□□□ 1,2
Trav6d-5A0A075B6B9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22,5■■□□□ 1,19
Trav6d-5A0A075B6B9 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22,48■■□□□ 1,19
Trav6d-5A0A075B6B9 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22,47■■□□□ 1,19
Trav6d-5A0A075B6B9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22,47■■□□□ 1,19
Trav6d-5A0A075B6B9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22,46■■□□□ 1,19
Trav6d-5A0A075B6B9 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22,45■■□□□ 1,19
Trav6d-5A0A075B6B9 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22,45■■□□□ 1,18
Trav6d-5A0A075B6B9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22,42■■□□□ 1,18
Trav6d-5A0A075B6B9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC22,33■■□□□ 1,17
Trav6d-5A0A075B6B9 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22,32■■□□□ 1,16
Retrieved 100 of 76,532 protein–RNA pairs in 10,2 ms