Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 AC061975.6-201ENST00000579045 1553 ntBASIC19.87■□□□□ 0.77
CCDC28BQ9BUN5 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC28BQ9BUN5 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC28BQ9BUN5 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC28BQ9BUN5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC28BQ9BUN5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC28BQ9BUN5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC28BQ9BUN5 AC105233.4-201ENST00000642045 216 ntBASIC19.86■□□□□ 0.77
CCDC28BQ9BUN5 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC28BQ9BUN5 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 AL356441.2-201ENST00000443009 864 ntBASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 AC131281.2-201ENST00000520478 145 ntBASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 AC098818.2-201ENST00000564925 2320 ntBASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28BQ9BUN5 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CCDC28BQ9BUN5 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28BQ9BUN5 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC28BQ9BUN5 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC28BQ9BUN5 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC28BQ9BUN5 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC28BQ9BUN5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC28BQ9BUN5 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC28BQ9BUN5 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC28BQ9BUN5 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 237.7 ms