Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 ESRRAP1-201ENST00000400596 1257 ntBASIC6.28□□□□□ -1.4
SYNE1Q8NF91 UBE2SP1-201ENST00000450587 669 ntBASIC6.28□□□□□ -1.4
SYNE1Q8NF91 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 RNA5SP413-201ENST00000516373 109 ntBASIC6.28□□□□□ -1.4
SYNE1Q8NF91 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CYP2T3P-201ENST00000601990 817 ntBASIC6.28□□□□□ -1.4
SYNE1Q8NF91 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC6.27□□□□□ -1.4
SYNE1Q8NF91 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.4
SYNE1Q8NF91 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.4
SYNE1Q8NF91 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AC007375.3-201ENST00000600936 2314 ntBASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 LINC00565-201ENST00000562710 2331 ntBASIC6.27□□□□□ -1.41
SYNE1Q8NF91 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 FAM210CP-201ENST00000445714 574 ntBASIC6.27□□□□□ -1.41
SYNE1Q8NF91 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms