Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 AC073912.3-201ENST00000624414 853 ntBASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDDC3Q8N4P3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
HDDC3Q8N4P3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
HDDC3Q8N4P3 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
HDDC3Q8N4P3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 AC087633.2-202ENST00000565166 1439 ntBASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.57■□□□□ 0.88
HDDC3Q8N4P3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 PGM5P4-201ENST00000421970 445 ntBASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 MIR4497-201ENST00000583208 89 ntBASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.56■□□□□ 0.88
HDDC3Q8N4P3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 KRT17P3-201ENST00000420566 1262 ntBASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 C1QBPP2-201ENST00000528754 825 ntBASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 C2orf69P4-201ENST00000565394 541 ntBASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 AC008403.3-201ENST00000598924 454 ntBASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDDC3Q8N4P3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 ECEL1P3-201ENST00000427961 737 ntBASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 RPPH1-201ENST00000516869 333 ntBASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms