Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
SH3RF1Q7Z6J0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.51■■□□□ 1.35
SH3RF1Q7Z6J0 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SH3RF1Q7Z6J0 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
SH3RF1Q7Z6J0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.51■■□□□ 1.35
SH3RF1Q7Z6J0 AC010980.2-201ENST00000587099 1412 ntBASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 UNC93B5-201ENST00000530315 699 ntBASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC23.5■■□□□ 1.35
SH3RF1Q7Z6J0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 RHOD-202ENST00000532559 538 ntTSL 3 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SH3RF1Q7Z6J0 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.48■■□□□ 1.35
SH3RF1Q7Z6J0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 AL157384.1-201ENST00000445995 2473 ntBASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.47■■□□□ 1.35
SH3RF1Q7Z6J0 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 AP003097.1-201ENST00000530657 1135 ntBASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 PLK5-205ENST00000642079 1969 ntBASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
SH3RF1Q7Z6J0 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC23.45■■□□□ 1.35
SH3RF1Q7Z6J0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.35
SH3RF1Q7Z6J0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 MME-217ENST00000616757 1315 ntTSL 5 BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.45■■□□□ 1.34
SH3RF1Q7Z6J0 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms