Protein–RNA interactions for Protein: Q5T6M2

LINC00242, Putative uncharacterized protein encoded by LINC00242, humanhuman

Predictions only

Length 205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00242Q5T6M2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00242Q5T6M2 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00242Q5T6M2 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00242Q5T6M2 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00242Q5T6M2 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00242Q5T6M2 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC13.98□□□□□ -0.17
LINC00242Q5T6M2 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC13.98□□□□□ -0.17
LINC00242Q5T6M2 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00242Q5T6M2 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 AC061975.6-201ENST00000579045 1553 ntBASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 AICDA-202ENST00000537228 667 ntTSL 5 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 MIR4767-201ENST00000582827 78 ntBASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 TRIR-205ENST00000592273 783 ntTSL 3 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 AC053503.5-201ENST00000601508 636 ntBASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00242Q5T6M2 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 AC116562.4-201ENST00000641316 2276 ntBASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 LHPP-203ENST00000392757 840 ntTSL 3 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 AL356441.2-201ENST00000443009 864 ntBASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 EEF1DP3-203ENST00000566025 782 ntBASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 AC105233.4-201ENST00000642045 216 ntBASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00242Q5T6M2 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00242Q5T6M2 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00242Q5T6M2 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00242Q5T6M2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00242Q5T6M2 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC13.96□□□□□ -0.18
LINC00242Q5T6M2 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC13.96□□□□□ -0.18
LINC00242Q5T6M2 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 AC131281.2-201ENST00000520478 145 ntBASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00242Q5T6M2 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms