Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
PDLIM3Q53GG5 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
PDLIM3Q53GG5 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC16.89■□□□□ 0.3
PDLIM3Q53GG5 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PDLIM3Q53GG5 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.89■□□□□ 0.3
PDLIM3Q53GG5 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PDLIM3Q53GG5 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PDLIM3Q53GG5 AP004607.4-201ENST00000530158 1459 ntBASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 NARF-205ENST00000412079 1760 ntTSL 5 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
PDLIM3Q53GG5 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 LINC01006-201ENST00000333319 2292 ntBASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 GABARAPL3-202ENST00000624044 1851 ntBASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
PDLIM3Q53GG5 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 AC006128.1-201ENST00000624704 1661 ntBASIC16.85■□□□□ 0.29
PDLIM3Q53GG5 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms