Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.32■□□□□ 0.36
USF1P22415 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USF1P22415 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.32■□□□□ 0.36
USF1P22415 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.32■□□□□ 0.36
USF1P22415 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.32■□□□□ 0.36
USF1P22415 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.32■□□□□ 0.36
USF1P22415 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.32■□□□□ 0.36
USF1P22415 AC073648.6-201ENST00000641589 218 ntBASIC17.32■□□□□ 0.36
USF1P22415 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USF1P22415 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.31■□□□□ 0.36
USF1P22415 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
USF1P22415 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 MCRIP2P1-201ENST00000394346 511 ntBASIC17.31■□□□□ 0.36
USF1P22415 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.31■□□□□ 0.36
USF1P22415 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 RPS2P4-201ENST00000476944 856 ntBASIC17.31■□□□□ 0.36
USF1P22415 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.31■□□□□ 0.36
USF1P22415 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
USF1P22415 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
USF1P22415 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USF1P22415 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USF1P22415 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USF1P22415 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USF1P22415 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.3■□□□□ 0.36
USF1P22415 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.3■□□□□ 0.36
USF1P22415 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.3■□□□□ 0.36
USF1P22415 UNC93B4-201ENST00000505679 747 ntBASIC17.3■□□□□ 0.36
USF1P22415 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
USF1P22415 AC060766.5-201ENST00000590539 871 ntBASIC17.3■□□□□ 0.36
USF1P22415 HLA-B-256ENST00000639848 1089 ntBASIC17.3■□□□□ 0.36
USF1P22415 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USF1P22415 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USF1P22415 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USF1P22415 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
USF1P22415 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
USF1P22415 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.29■□□□□ 0.36
USF1P22415 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF1P22415 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF1P22415 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF1P22415 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.29■□□□□ 0.36
USF1P22415 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
USF1P22415 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF1P22415 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF1P22415 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.29■□□□□ 0.36
USF1P22415 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.29■□□□□ 0.36
USF1P22415 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.29■□□□□ 0.36
USF1P22415 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
USF1P22415 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
USF1P22415 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
USF1P22415 AC007375.3-201ENST00000600936 2314 ntBASIC17.29■□□□□ 0.36
USF1P22415 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
USF1P22415 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
USF1P22415 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.28■□□□□ 0.36
USF1P22415 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.28■□□□□ 0.36
USF1P22415 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.28■□□□□ 0.36
USF1P22415 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.28■□□□□ 0.36
USF1P22415 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
USF1P22415 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF1P22415 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.28■□□□□ 0.36
USF1P22415 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.27■□□□□ 0.36
USF1P22415 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 AC244015.2-201ENST00000616358 1861 ntBASIC17.27■□□□□ 0.36
USF1P22415 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms