Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.83■□□□□ 0.76
COL5A1P20908 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL5A1P20908 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.83■□□□□ 0.76
COL5A1P20908 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
COL5A1P20908 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.83■□□□□ 0.76
COL5A1P20908 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL5A1P20908 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.83■□□□□ 0.76
COL5A1P20908 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL5A1P20908 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL5A1P20908 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.83■□□□□ 0.76
COL5A1P20908 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
COL5A1P20908 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A1P20908 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A1P20908 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A1P20908 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL5A1P20908 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
COL5A1P20908 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.82■□□□□ 0.76
COL5A1P20908 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.82■□□□□ 0.76
COL5A1P20908 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A1P20908 AC120498.8-201ENST00000614275 531 ntBASIC19.82■□□□□ 0.76
COL5A1P20908 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL5A1P20908 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.82■□□□□ 0.76
COL5A1P20908 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A1P20908 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A1P20908 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.81■□□□□ 0.76
COL5A1P20908 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
COL5A1P20908 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A1P20908 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
COL5A1P20908 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A1P20908 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.81■□□□□ 0.76
COL5A1P20908 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A1P20908 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A1P20908 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A1P20908 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A1P20908 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.81■□□□□ 0.76
COL5A1P20908 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A1P20908 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.81■□□□□ 0.76
COL5A1P20908 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.8■□□□□ 0.76
COL5A1P20908 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
COL5A1P20908 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
COL5A1P20908 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.8■□□□□ 0.76
COL5A1P20908 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
COL5A1P20908 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.8■□□□□ 0.76
COL5A1P20908 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.8■□□□□ 0.76
COL5A1P20908 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.8■□□□□ 0.76
COL5A1P20908 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A1P20908 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
COL5A1P20908 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
COL5A1P20908 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A1P20908 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
COL5A1P20908 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A1P20908 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.79■□□□□ 0.76
COL5A1P20908 AC097493.4-201ENST00000641197 219 ntBASIC19.79■□□□□ 0.76
COL5A1P20908 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A1P20908 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
COL5A1P20908 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.79■□□□□ 0.76
COL5A1P20908 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A1P20908 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A1P20908 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL5A1P20908 RCN1P1-201ENST00000400413 996 ntBASIC19.78■□□□□ 0.76
COL5A1P20908 KRT18P21-201ENST00000515767 1272 ntBASIC19.78■□□□□ 0.76
COL5A1P20908 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.78■□□□□ 0.76
COL5A1P20908 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL5A1P20908 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms