Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.03■□□□□ 0.32
ATF4P18848 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
ATF4P18848 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ATF4P18848 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.03■□□□□ 0.32
ATF4P18848 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
ATF4P18848 MIR4787-201ENST00000607364 84 ntBASIC17.03■□□□□ 0.32
ATF4P18848 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.03■□□□□ 0.32
ATF4P18848 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.03■□□□□ 0.32
ATF4P18848 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
ATF4P18848 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
ATF4P18848 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
ATF4P18848 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATF4P18848 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
ATF4P18848 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ATF4P18848 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ATF4P18848 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
ATF4P18848 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.02■□□□□ 0.32
ATF4P18848 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATF4P18848 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
ATF4P18848 TK2-202ENST00000417693 1046 ntTSL 2 BASIC17.02■□□□□ 0.32
ATF4P18848 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC17.02■□□□□ 0.32
ATF4P18848 SNX5-217ENST00000606557 1087 ntBASIC17.02■□□□□ 0.32
ATF4P18848 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
ATF4P18848 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
ATF4P18848 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ATF4P18848 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ATF4P18848 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ATF4P18848 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
ATF4P18848 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ATF4P18848 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ATF4P18848 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.31
ATF4P18848 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ATF4P18848 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ATF4P18848 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.01■□□□□ 0.31
ATF4P18848 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 AL139384.1-201ENST00000612143 3047 ntBASIC17.01■□□□□ 0.31
ATF4P18848 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
ATF4P18848 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC17.01■□□□□ 0.31
ATF4P18848 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
ATF4P18848 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.01■□□□□ 0.31
ATF4P18848 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.01■□□□□ 0.31
ATF4P18848 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
ATF4P18848 AC021242.3-201ENST00000607598 1377 ntBASIC17.01■□□□□ 0.31
ATF4P18848 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
ATF4P18848 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ATF4P18848 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17■□□□□ 0.31
ATF4P18848 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
ATF4P18848 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17■□□□□ 0.31
ATF4P18848 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ATF4P18848 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC17■□□□□ 0.31
ATF4P18848 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
ATF4P18848 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17■□□□□ 0.31
ATF4P18848 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ATF4P18848 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17■□□□□ 0.31
ATF4P18848 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
ATF4P18848 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
ATF4P18848 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
ATF4P18848 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17■□□□□ 0.31
ATF4P18848 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17■□□□□ 0.31
ATF4P18848 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ATF4P18848 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
ATF4P18848 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
ATF4P18848 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
ATF4P18848 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
ATF4P18848 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.99■□□□□ 0.31
ATF4P18848 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
ATF4P18848 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
ATF4P18848 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ATF4P18848 GABARAPL3-202ENST00000624044 1851 ntBASIC16.99■□□□□ 0.31
ATF4P18848 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms