Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC24.17■■□□□ 1.46
HMGB1P09429 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC24.17■■□□□ 1.46
HMGB1P09429 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC24.17■■□□□ 1.46
HMGB1P09429 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC24.17■■□□□ 1.46
HMGB1P09429 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
HMGB1P09429 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGB1P09429 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
HMGB1P09429 AC092720.2-201ENST00000602388 1665 ntBASIC24.16■■□□□ 1.46
HMGB1P09429 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGB1P09429 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGB1P09429 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.16■■□□□ 1.46
HMGB1P09429 MIR935-201ENST00000401179 91 ntBASIC24.16■■□□□ 1.46
HMGB1P09429 PGM5P4-201ENST00000421970 445 ntBASIC24.16■■□□□ 1.46
HMGB1P09429 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC24.16■■□□□ 1.46
HMGB1P09429 PLLP-204ENST00000569059 665 ntTSL 3 BASIC24.16■■□□□ 1.46
HMGB1P09429 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.16■■□□□ 1.46
HMGB1P09429 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGB1P09429 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
HMGB1P09429 KRT8P36-201ENST00000489121 1440 ntBASIC24.16■■□□□ 1.46
HMGB1P09429 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGB1P09429 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC24.15■■□□□ 1.46
HMGB1P09429 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.15■■□□□ 1.46
HMGB1P09429 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
HMGB1P09429 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
HMGB1P09429 METTL26-203ENST00000397664 604 ntTSL 2 BASIC24.15■■□□□ 1.46
HMGB1P09429 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC24.15■■□□□ 1.46
HMGB1P09429 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.15■■□□□ 1.46
HMGB1P09429 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC24.15■■□□□ 1.46
HMGB1P09429 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC24.15■■□□□ 1.46
HMGB1P09429 MDK-213ENST00000617138 635 ntTSL 2 BASIC24.15■■□□□ 1.46
HMGB1P09429 AC231657.2-201ENST00000624556 255 ntBASIC24.15■■□□□ 1.46
HMGB1P09429 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.15■■□□□ 1.46
HMGB1P09429 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
HMGB1P09429 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC24.15■■□□□ 1.46
HMGB1P09429 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
HMGB1P09429 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
HMGB1P09429 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
HMGB1P09429 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
HMGB1P09429 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.15■■□□□ 1.46
HMGB1P09429 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC24.14■■□□□ 1.46
HMGB1P09429 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
HMGB1P09429 AC092667.1-201ENST00000434301 2586 ntBASIC24.14■■□□□ 1.46
HMGB1P09429 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
HMGB1P09429 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.46
HMGB1P09429 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.46
HMGB1P09429 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
HMGB1P09429 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.14■■□□□ 1.45
HMGB1P09429 AC068338.2-201ENST00000563278 1430 ntBASIC24.14■■□□□ 1.45
HMGB1P09429 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
HMGB1P09429 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
HMGB1P09429 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC24.14■■□□□ 1.45
HMGB1P09429 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGB1P09429 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
HMGB1P09429 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.13■■□□□ 1.45
HMGB1P09429 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGB1P09429 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
HMGB1P09429 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGB1P09429 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC24.13■■□□□ 1.45
HMGB1P09429 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGB1P09429 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGB1P09429 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.13■■□□□ 1.45
HMGB1P09429 AC016405.3-201ENST00000607710 860 ntBASIC24.13■■□□□ 1.45
HMGB1P09429 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24.13■■□□□ 1.45
HMGB1P09429 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC24.13■■□□□ 1.45
HMGB1P09429 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC24.13■■□□□ 1.45
HMGB1P09429 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC24.13■■□□□ 1.45
HMGB1P09429 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.13■■□□□ 1.45
HMGB1P09429 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
HMGB1P09429 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGB1P09429 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGB1P09429 DET1-207ENST00000564406 2315 ntTSL 2 BASIC24.12■■□□□ 1.45
HMGB1P09429 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGB1P09429 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
HMGB1P09429 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGB1P09429 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGB1P09429 AC100791.3-201ENST00000617619 330 ntBASIC24.12■■□□□ 1.45
HMGB1P09429 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
HMGB1P09429 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.12■■□□□ 1.45
HMGB1P09429 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
HMGB1P09429 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGB1P09429 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGB1P09429 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC24.12■■□□□ 1.45
HMGB1P09429 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
HMGB1P09429 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGB1P09429 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
HMGB1P09429 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
HMGB1P09429 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGB1P09429 AC087633.2-202ENST00000565166 1439 ntBASIC24.11■■□□□ 1.45
HMGB1P09429 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HMGB1P09429 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC24.11■■□□□ 1.45
HMGB1P09429 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
HMGB1P09429 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
HMGB1P09429 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms