Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.58■□□□□ 0.72
SEMA3DO95025 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
SEMA3DO95025 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
SEMA3DO95025 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SEMA3DO95025 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SEMA3DO95025 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SEMA3DO95025 LINC01521-201ENST00000504184 1943 ntBASIC19.58■□□□□ 0.72
SEMA3DO95025 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.58■□□□□ 0.72
SEMA3DO95025 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SEMA3DO95025 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SEMA3DO95025 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SEMA3DO95025 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.57■□□□□ 0.72
SEMA3DO95025 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEMA3DO95025 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.57■□□□□ 0.72
SEMA3DO95025 AP005212.1-201ENST00000581547 1997 ntBASIC19.57■□□□□ 0.72
SEMA3DO95025 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.57■□□□□ 0.72
SEMA3DO95025 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SEMA3DO95025 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEMA3DO95025 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEMA3DO95025 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.57■□□□□ 0.72
SEMA3DO95025 FP700111.2-201ENST00000619190 1892 ntBASIC19.57■□□□□ 0.72
SEMA3DO95025 GABARAPL3-202ENST00000624044 1851 ntBASIC19.57■□□□□ 0.72
SEMA3DO95025 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEMA3DO95025 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.57■□□□□ 0.72
SEMA3DO95025 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.57■□□□□ 0.72
SEMA3DO95025 AL162412.1-201ENST00000567129 965 ntBASIC19.57■□□□□ 0.72
SEMA3DO95025 AC013268.1-206ENST00000638368 961 ntBASIC19.57■□□□□ 0.72
SEMA3DO95025 AC112229.1-201ENST00000639295 961 ntBASIC19.57■□□□□ 0.72
SEMA3DO95025 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.57■□□□□ 0.72
SEMA3DO95025 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEMA3DO95025 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEMA3DO95025 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SEMA3DO95025 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SEMA3DO95025 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.56■□□□□ 0.72
SEMA3DO95025 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SEMA3DO95025 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEMA3DO95025 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEMA3DO95025 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEMA3DO95025 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEMA3DO95025 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEMA3DO95025 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SEMA3DO95025 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SEMA3DO95025 AC016769.1-201ENST00000409132 1010 ntBASIC19.56■□□□□ 0.72
SEMA3DO95025 AC006015.1-201ENST00000429970 570 ntBASIC19.56■□□□□ 0.72
SEMA3DO95025 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.56■□□□□ 0.72
SEMA3DO95025 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SEMA3DO95025 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.56■□□□□ 0.72
SEMA3DO95025 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SEMA3DO95025 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SEMA3DO95025 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.56■□□□□ 0.72
SEMA3DO95025 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SEMA3DO95025 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
SEMA3DO95025 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.55■□□□□ 0.72
SEMA3DO95025 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SEMA3DO95025 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SEMA3DO95025 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.55■□□□□ 0.72
SEMA3DO95025 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SEMA3DO95025 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SEMA3DO95025 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SEMA3DO95025 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.55■□□□□ 0.72
SEMA3DO95025 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.55■□□□□ 0.72
SEMA3DO95025 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.55■□□□□ 0.72
SEMA3DO95025 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.55■□□□□ 0.72
SEMA3DO95025 MFSD11-216ENST00000590393 1141 ntBASIC19.55■□□□□ 0.72
SEMA3DO95025 MIR2861-201ENST00000636310 90 ntBASIC19.55■□□□□ 0.72
SEMA3DO95025 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.55■□□□□ 0.72
SEMA3DO95025 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.55■□□□□ 0.72
SEMA3DO95025 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.55■□□□□ 0.72
SEMA3DO95025 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.55■□□□□ 0.72
SEMA3DO95025 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SEMA3DO95025 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.54■□□□□ 0.72
SEMA3DO95025 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SEMA3DO95025 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
SEMA3DO95025 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
SEMA3DO95025 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.54■□□□□ 0.72
SEMA3DO95025 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SEMA3DO95025 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.54■□□□□ 0.72
SEMA3DO95025 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.54■□□□□ 0.72
SEMA3DO95025 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 AL591742.1-201ENST00000604433 565 ntBASIC19.54■□□□□ 0.72
SEMA3DO95025 FAM21FP-204ENST00000608637 956 ntBASIC19.54■□□□□ 0.72
SEMA3DO95025 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.54■□□□□ 0.72
SEMA3DO95025 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms