Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.97■□□□□ 0.47
LMX1BO60663 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
LMX1BO60663 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1BO60663 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.97■□□□□ 0.47
LMX1BO60663 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
LMX1BO60663 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
LMX1BO60663 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1BO60663 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.96■□□□□ 0.47
LMX1BO60663 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1BO60663 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.96■□□□□ 0.47
LMX1BO60663 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1BO60663 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.96■□□□□ 0.47
LMX1BO60663 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1BO60663 AC020907.5-201ENST00000624372 1936 ntBASIC17.96■□□□□ 0.47
LMX1BO60663 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.96■□□□□ 0.47
LMX1BO60663 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1BO60663 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1BO60663 MIR663A-201ENST00000385250 93 ntBASIC17.96■□□□□ 0.47
LMX1BO60663 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.96■□□□□ 0.47
LMX1BO60663 AC079140.4-201ENST00000507448 529 ntBASIC17.96■□□□□ 0.47
LMX1BO60663 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.96■□□□□ 0.47
LMX1BO60663 TMEM191A-211ENST00000637163 1067 ntBASIC17.96■□□□□ 0.47
LMX1BO60663 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.96■□□□□ 0.47
LMX1BO60663 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LMX1BO60663 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.96■□□□□ 0.47
LMX1BO60663 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.96■□□□□ 0.47
LMX1BO60663 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1BO60663 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1BO60663 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.96■□□□□ 0.47
LMX1BO60663 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
LMX1BO60663 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.96■□□□□ 0.46
LMX1BO60663 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
LMX1BO60663 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
LMX1BO60663 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.95■□□□□ 0.46
LMX1BO60663 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.95■□□□□ 0.46
LMX1BO60663 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 AC112907.3-201ENST00000577781 2400 ntBASIC17.95■□□□□ 0.46
LMX1BO60663 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.95■□□□□ 0.46
LMX1BO60663 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.95■□□□□ 0.46
LMX1BO60663 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
LMX1BO60663 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1BO60663 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
LMX1BO60663 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.94■□□□□ 0.46
LMX1BO60663 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.94■□□□□ 0.46
LMX1BO60663 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.94■□□□□ 0.46
LMX1BO60663 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.94■□□□□ 0.46
LMX1BO60663 AFG3L1P-217ENST00000557444 2447 ntBASIC17.94■□□□□ 0.46
LMX1BO60663 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.94■□□□□ 0.46
LMX1BO60663 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LMX1BO60663 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.94■□□□□ 0.46
LMX1BO60663 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LMX1BO60663 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.93■□□□□ 0.46
LMX1BO60663 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.93■□□□□ 0.46
LMX1BO60663 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.93■□□□□ 0.46
LMX1BO60663 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LMX1BO60663 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LMX1BO60663 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.93■□□□□ 0.46
LMX1BO60663 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.93■□□□□ 0.46
LMX1BO60663 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.93■□□□□ 0.46
LMX1BO60663 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LMX1BO60663 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LMX1BO60663 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.93■□□□□ 0.46
LMX1BO60663 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.93■□□□□ 0.46
LMX1BO60663 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms