Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 KRT18P5-201ENST00000436075 1291 ntBASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 TERF1P5-201ENST00000477545 1207 ntBASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 MIR5787-201ENST00000611784 55 ntBASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 AC010536.3-201ENST00000620306 533 ntBASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS9D1Q9Y2B5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 FAM21FP-204ENST00000608637 956 ntBASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS9D1Q9Y2B5 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 AC016769.1-201ENST00000409132 1010 ntBASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 AL162412.1-201ENST00000567129 965 ntBASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 AL591742.1-201ENST00000604433 565 ntBASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 MIR2861-201ENST00000636310 90 ntBASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 AC013268.1-206ENST00000638368 961 ntBASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 AC112229.1-201ENST00000639295 961 ntBASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS9D1Q9Y2B5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 AC007322.4-201ENST00000509611 723 ntBASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.34■□□□□ 0.85
VPS9D1Q9Y2B5 AC020907.5-201ENST00000624372 1936 ntBASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 AL157384.1-201ENST00000445995 2473 ntBASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms