Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
AP4E1Q9UPM8 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.3■■□□□ 1
AP4E1Q9UPM8 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.3■■□□□ 1
AP4E1Q9UPM8 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
AP4E1Q9UPM8 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.29■■□□□ 1
AP4E1Q9UPM8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
AP4E1Q9UPM8 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.29■■□□□ 1
AP4E1Q9UPM8 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
AP4E1Q9UPM8 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
AP4E1Q9UPM8 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
AP4E1Q9UPM8 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.29■■□□□ 1
AP4E1Q9UPM8 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.28■■□□□ 1
AP4E1Q9UPM8 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
AP4E1Q9UPM8 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 AC016405.3-201ENST00000607710 860 ntBASIC21.28■■□□□ 1
AP4E1Q9UPM8 FAM21FP-204ENST00000608637 956 ntBASIC21.28■■□□□ 1
AP4E1Q9UPM8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
AP4E1Q9UPM8 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.28■■□□□ 1
AP4E1Q9UPM8 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.28■■□□□ 1
AP4E1Q9UPM8 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.28■■□□□ 1
AP4E1Q9UPM8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.27■■□□□ 1
AP4E1Q9UPM8 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.27■■□□□ 1
AP4E1Q9UPM8 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.27■■□□□ 1
AP4E1Q9UPM8 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
AP4E1Q9UPM8 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.27■■□□□ 1
AP4E1Q9UPM8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
AP4E1Q9UPM8 AC004911.1-201ENST00000416316 871 ntBASIC21.27■■□□□ 1
AP4E1Q9UPM8 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.27■■□□□ 1
AP4E1Q9UPM8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.27■■□□□ 1
AP4E1Q9UPM8 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.27■■□□□ 1
AP4E1Q9UPM8 AL162412.1-201ENST00000567129 965 ntBASIC21.27■■□□□ 1
AP4E1Q9UPM8 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
AP4E1Q9UPM8 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.27■■□□□ 1
AP4E1Q9UPM8 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
AP4E1Q9UPM8 AC068338.2-201ENST00000563278 1430 ntBASIC21.27■■□□□ 1
AP4E1Q9UPM8 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
AP4E1Q9UPM8 AC073314.1-201ENST00000568729 2216 ntBASIC21.27■□□□□ 0.99
AP4E1Q9UPM8 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 AL121603.2-201ENST00000557373 2117 ntBASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 AL137784.2-201ENST00000607332 1000 ntBASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 AC231657.2-201ENST00000624556 255 ntBASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 MIR2861-201ENST00000636310 90 ntBASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP4E1Q9UPM8 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.25■□□□□ 0.99
AP4E1Q9UPM8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms