Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 AC099791.1-201ENST00000416440 715 ntBASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 AC125437.2-201ENST00000625180 2167 ntBASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 AP001330.3-201ENST00000520123 633 ntBASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 AC105233.4-201ENST00000642045 216 ntBASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCAL1Q9NZC9 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 AC027682.1-201ENST00000562846 899 ntBASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 AF213884.3-201ENST00000563833 479 ntBASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 AC116562.4-201ENST00000641316 2276 ntBASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCAL1Q9NZC9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 AL031432.3-201ENST00000607698 485 ntBASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 AL158211.5-201ENST00000623583 2518 ntBASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCAL1Q9NZC9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 MIR939-201ENST00000401314 82 ntBASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms