Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN3AQ9NY46 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 KRT17P1-201ENST00000399211 1546 ntBASIC19.46■□□□□ 0.71
SCN3AQ9NY46 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.46■□□□□ 0.71
SCN3AQ9NY46 AC093787.1-201ENST00000450396 207 ntBASIC19.46■□□□□ 0.71
SCN3AQ9NY46 AL138781.1-201ENST00000566567 1274 ntBASIC19.46■□□□□ 0.71
SCN3AQ9NY46 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 AC011484.1-201ENST00000377652 1995 ntBASIC19.45■□□□□ 0.7
SCN3AQ9NY46 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 FP700111.2-201ENST00000619190 1892 ntBASIC19.45■□□□□ 0.7
SCN3AQ9NY46 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN3AQ9NY46 AL157384.1-201ENST00000445995 2473 ntBASIC19.45■□□□□ 0.7
SCN3AQ9NY46 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 AL121603.2-201ENST00000557373 2117 ntBASIC19.44■□□□□ 0.7
SCN3AQ9NY46 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 AC142086.2-201ENST00000569753 217 ntBASIC19.44■□□□□ 0.7
SCN3AQ9NY46 CYP2T3P-201ENST00000601990 817 ntBASIC19.44■□□□□ 0.7
SCN3AQ9NY46 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.44■□□□□ 0.7
SCN3AQ9NY46 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 MCRIP2P1-201ENST00000394346 511 ntBASIC19.43■□□□□ 0.7
SCN3AQ9NY46 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SCN3AQ9NY46 AC121338.2-201ENST00000622535 1744 ntBASIC19.42■□□□□ 0.7
SCN3AQ9NY46 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 FAM21FP-204ENST00000608637 956 ntBASIC19.42■□□□□ 0.7
SCN3AQ9NY46 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms