Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PCDH9Q9HC56 AL162377.1-201ENST00000618844 1793 ntBASIC21.18■□□□□ 0.98
PCDH9Q9HC56 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH9Q9HC56 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 KRT18P20-201ENST00000548986 1279 ntBASIC21.16■□□□□ 0.98
PCDH9Q9HC56 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 AC120498.10-201ENST00000621827 505 ntBASIC21.16■□□□□ 0.98
PCDH9Q9HC56 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH9Q9HC56 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 SLC7A5P2-201ENST00000553010 536 ntBASIC21.15■□□□□ 0.98
PCDH9Q9HC56 RARRES2P11-201ENST00000635158 484 ntBASIC21.15■□□□□ 0.98
PCDH9Q9HC56 AL512408.1-201ENST00000569378 2000 ntBASIC21.15■□□□□ 0.98
PCDH9Q9HC56 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDH9Q9HC56 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.14■□□□□ 0.98
PCDH9Q9HC56 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.98
PCDH9Q9HC56 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.14■□□□□ 0.98
PCDH9Q9HC56 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDH9Q9HC56 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDH9Q9HC56 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 AC137761.2-201ENST00000561729 223 ntBASIC21.14■□□□□ 0.97
PCDH9Q9HC56 AC145350.3-201ENST00000569033 163 ntBASIC21.14■□□□□ 0.97
PCDH9Q9HC56 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDH9Q9HC56 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 KRT16P2-201ENST00000414673 1423 ntBASIC21.13■□□□□ 0.97
PCDH9Q9HC56 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms