Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 MCRIP2P1-201ENST00000394346 511 ntBASIC21.37■■□□□ 1.01
EBF3Q9H4W6 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 AC142381.4-202ENST00000563973 229 ntBASIC21.37■■□□□ 1.01
EBF3Q9H4W6 AL589743.5-201ENST00000616611 1050 ntBASIC21.37■■□□□ 1.01
EBF3Q9H4W6 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
EBF3Q9H4W6 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 AC007322.3-201ENST00000426526 701 ntBASIC21.35■■□□□ 1.01
EBF3Q9H4W6 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 AC073648.6-201ENST00000641589 218 ntBASIC21.35■■□□□ 1.01
EBF3Q9H4W6 AP006294.2-201ENST00000641667 209 ntBASIC21.35■■□□□ 1.01
EBF3Q9H4W6 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
EBF3Q9H4W6 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.34■■□□□ 1.01
EBF3Q9H4W6 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
EBF3Q9H4W6 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
EBF3Q9H4W6 KRT18P68-201ENST00000392293 1000 ntBASIC21.34■■□□□ 1.01
EBF3Q9H4W6 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.34■■□□□ 1.01
EBF3Q9H4W6 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.34■■□□□ 1.01
EBF3Q9H4W6 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
EBF3Q9H4W6 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
EBF3Q9H4W6 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
EBF3Q9H4W6 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.33■■□□□ 1.01
EBF3Q9H4W6 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
EBF3Q9H4W6 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
EBF3Q9H4W6 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
EBF3Q9H4W6 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
EBF3Q9H4W6 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.33■■□□□ 1.01
EBF3Q9H4W6 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.33■■□□□ 1.01
EBF3Q9H4W6 AC060766.5-201ENST00000590539 871 ntBASIC21.33■■□□□ 1.01
EBF3Q9H4W6 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
EBF3Q9H4W6 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
EBF3Q9H4W6 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
EBF3Q9H4W6 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.32■■□□□ 1
EBF3Q9H4W6 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
EBF3Q9H4W6 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
EBF3Q9H4W6 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.32■■□□□ 1
EBF3Q9H4W6 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.32■■□□□ 1
EBF3Q9H4W6 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.32■■□□□ 1
EBF3Q9H4W6 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
EBF3Q9H4W6 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
EBF3Q9H4W6 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.32■■□□□ 1
EBF3Q9H4W6 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.32■■□□□ 1
EBF3Q9H4W6 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
EBF3Q9H4W6 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.32■■□□□ 1
EBF3Q9H4W6 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
EBF3Q9H4W6 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.31■■□□□ 1
EBF3Q9H4W6 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.31■■□□□ 1
EBF3Q9H4W6 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
EBF3Q9H4W6 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.31■■□□□ 1
EBF3Q9H4W6 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.31■■□□□ 1
EBF3Q9H4W6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.31■■□□□ 1
EBF3Q9H4W6 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
EBF3Q9H4W6 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.31■■□□□ 1
EBF3Q9H4W6 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
EBF3Q9H4W6 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
EBF3Q9H4W6 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.31■■□□□ 1
EBF3Q9H4W6 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
EBF3Q9H4W6 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.31■■□□□ 1
EBF3Q9H4W6 AC008403.3-201ENST00000598924 454 ntBASIC21.31■■□□□ 1
EBF3Q9H4W6 HLA-B-256ENST00000639848 1089 ntBASIC21.31■■□□□ 1
EBF3Q9H4W6 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.31■■□□□ 1
EBF3Q9H4W6 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
EBF3Q9H4W6 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
EBF3Q9H4W6 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms