Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 AC010980.2-201ENST00000587099 1412 ntBASIC19.34■□□□□ 0.69
PTCHD1Q96NR3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
PTCHD1Q96NR3 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 AL355802.2-201ENST00000402069 882 ntBASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 GUSBP6-202ENST00000438529 1198 ntBASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD1Q96NR3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 AC011484.1-201ENST00000377652 1995 ntBASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.32■□□□□ 0.68
PTCHD1Q96NR3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 AC121338.2-201ENST00000622535 1744 ntBASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.31■□□□□ 0.68
PTCHD1Q96NR3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 BX276092.2-201ENST00000417668 665 ntBASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 AC100791.3-201ENST00000617619 330 ntBASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD1Q96NR3 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 MIPEPP3-201ENST00000412105 444 ntBASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 AL138781.1-201ENST00000566567 1274 ntBASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.29■□□□□ 0.68
PTCHD1Q96NR3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms