Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
USP48Q86UV5 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC25.15■■□□□ 1.62
USP48Q86UV5 NME6-213ENST00000451657 871 ntTSL 2 BASIC25.15■■□□□ 1.62
USP48Q86UV5 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC25.15■■□□□ 1.62
USP48Q86UV5 SNORA78-201ENST00000459373 127 ntBASIC25.15■■□□□ 1.62
USP48Q86UV5 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC25.15■■□□□ 1.62
USP48Q86UV5 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC25.15■■□□□ 1.62
USP48Q86UV5 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USP48Q86UV5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
USP48Q86UV5 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC25.14■■□□□ 1.62
USP48Q86UV5 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
USP48Q86UV5 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
USP48Q86UV5 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC25.14■■□□□ 1.62
USP48Q86UV5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
USP48Q86UV5 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
USP48Q86UV5 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
USP48Q86UV5 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
USP48Q86UV5 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC25.14■■□□□ 1.62
USP48Q86UV5 AC243732.1-201ENST00000612648 864 ntBASIC25.14■■□□□ 1.62
USP48Q86UV5 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC25.14■■□□□ 1.61
USP48Q86UV5 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
USP48Q86UV5 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC25.13■■□□□ 1.61
USP48Q86UV5 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
USP48Q86UV5 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
USP48Q86UV5 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
USP48Q86UV5 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
USP48Q86UV5 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC25.13■■□□□ 1.61
USP48Q86UV5 AC060766.5-201ENST00000590539 871 ntBASIC25.13■■□□□ 1.61
USP48Q86UV5 SPIB-206ENST00000596074 847 ntTSL 2 BASIC25.13■■□□□ 1.61
USP48Q86UV5 CYP2T3P-201ENST00000601990 817 ntBASIC25.13■■□□□ 1.61
USP48Q86UV5 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC25.13■■□□□ 1.61
USP48Q86UV5 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
USP48Q86UV5 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
USP48Q86UV5 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC25.13■■□□□ 1.61
USP48Q86UV5 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
USP48Q86UV5 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC25.12■■□□□ 1.61
USP48Q86UV5 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
USP48Q86UV5 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC25.12■■□□□ 1.61
USP48Q86UV5 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP48Q86UV5 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC25.12■■□□□ 1.61
USP48Q86UV5 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC25.12■■□□□ 1.61
USP48Q86UV5 MAX-217ENST00000557277 728 ntTSL 3 BASIC25.12■■□□□ 1.61
USP48Q86UV5 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC25.12■■□□□ 1.61
USP48Q86UV5 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
USP48Q86UV5 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25.12■■□□□ 1.61
USP48Q86UV5 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC25.12■■□□□ 1.61
USP48Q86UV5 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP48Q86UV5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
USP48Q86UV5 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP48Q86UV5 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP48Q86UV5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
USP48Q86UV5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC25.12■■□□□ 1.61
USP48Q86UV5 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP48Q86UV5 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP48Q86UV5 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
USP48Q86UV5 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP48Q86UV5 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
USP48Q86UV5 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
USP48Q86UV5 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
USP48Q86UV5 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC25.11■■□□□ 1.61
USP48Q86UV5 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC25.11■■□□□ 1.61
USP48Q86UV5 CBFB-203ENST00000561924 584 ntTSL 5 BASIC25.11■■□□□ 1.61
USP48Q86UV5 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC25.11■■□□□ 1.61
USP48Q86UV5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC25.11■■□□□ 1.61
USP48Q86UV5 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP48Q86UV5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
USP48Q86UV5 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.1■■□□□ 1.61
USP48Q86UV5 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC25.1■■□□□ 1.61
USP48Q86UV5 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC25.1■■□□□ 1.61
USP48Q86UV5 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USP48Q86UV5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
USP48Q86UV5 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USP48Q86UV5 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
USP48Q86UV5 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC25.1■■□□□ 1.61
USP48Q86UV5 RN7SL471P-201ENST00000580476 299 ntBASIC25.1■■□□□ 1.61
USP48Q86UV5 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC25.1■■□□□ 1.61
USP48Q86UV5 HLA-B-256ENST00000639848 1089 ntBASIC25.1■■□□□ 1.61
USP48Q86UV5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC25.1■■□□□ 1.61
USP48Q86UV5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
USP48Q86UV5 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
USP48Q86UV5 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC25.1■■□□□ 1.61
USP48Q86UV5 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USP48Q86UV5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
USP48Q86UV5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
USP48Q86UV5 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP48Q86UV5 AC244015.2-201ENST00000616358 1861 ntBASIC25.09■■□□□ 1.61
USP48Q86UV5 ME2-206ENST00000638410 2289 ntTSL 5 BASIC25.09■■□□□ 1.61
USP48Q86UV5 ME2-210ENST00000639255 2262 ntTSL 5 BASIC25.09■■□□□ 1.61
USP48Q86UV5 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP48Q86UV5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC25.09■■□□□ 1.61
USP48Q86UV5 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP48Q86UV5 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC25.09■■□□□ 1.61
USP48Q86UV5 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC25.09■■□□□ 1.61
USP48Q86UV5 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC25.09■■□□□ 1.61
USP48Q86UV5 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC25.09■■□□□ 1.61
USP48Q86UV5 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP48Q86UV5 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP48Q86UV5 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP48Q86UV5 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC25.08■■□□□ 1.61
USP48Q86UV5 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms