Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 WDR88-203ENST00000592765 651 ntTSL 5 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 AP001412.1-201ENST00000608405 714 ntBASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 NUDT16P1-203ENST00000513809 620 ntBASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC88AQ3V6T2 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.64
CCDC88AQ3V6T2 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC25.33■■□□□ 1.64
CCDC88AQ3V6T2 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 KRT8P9-201ENST00000558927 1449 ntBASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 AC087633.2-202ENST00000565166 1439 ntBASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 TERT-206ENST00000508104 2486 ntTSL 5 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC25.32■■□□□ 1.64
CCDC88AQ3V6T2 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC88AQ3V6T2 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 AC092865.7-201ENST00000641832 219 ntBASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC25.3■■□□□ 1.64
CCDC88AQ3V6T2 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 NARF-205ENST00000412079 1760 ntTSL 5 BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC88AQ3V6T2 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 CABP2-204ENST00000636477 941 ntTSL 5 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC25.28■■□□□ 1.64
CCDC88AQ3V6T2 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms